miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19761 3' -55.3 NC_004687.1 + 42260 0.66 0.932495
Target:  5'- cGCCCUggaGCAcUAcCCGGGUGC-CGCCg -3'
miRNA:   3'- cUGGGGa--CGUaGU-GGUCUACGaGUGG- -5'
19761 3' -55.3 NC_004687.1 + 73015 0.66 0.932495
Target:  5'- cGGCCCUggagGCGUCcgaaGCCgaAGAUGCcCACg -3'
miRNA:   3'- -CUGGGGa---CGUAG----UGG--UCUACGaGUGg -5'
19761 3' -55.3 NC_004687.1 + 24802 0.66 0.932495
Target:  5'- cGAUCCg-GCGU--CCAGGUGCUCgACCc -3'
miRNA:   3'- -CUGGGgaCGUAguGGUCUACGAG-UGG- -5'
19761 3' -55.3 NC_004687.1 + 36734 0.66 0.932495
Target:  5'- aGGCCCCggGCAagACCGccGGUGCcuucgaCACCu -3'
miRNA:   3'- -CUGGGGa-CGUagUGGU--CUACGa-----GUGG- -5'
19761 3' -55.3 NC_004687.1 + 83890 0.66 0.932495
Target:  5'- uACCaCCUGCugcgcggCACCAccuUGCUgGCCg -3'
miRNA:   3'- cUGG-GGACGua-----GUGGUcu-ACGAgUGG- -5'
19761 3' -55.3 NC_004687.1 + 103459 0.66 0.927261
Target:  5'- cGCCCgaGCGUCuuccuGCC-GAUGCUuCAUCa -3'
miRNA:   3'- cUGGGgaCGUAG-----UGGuCUACGA-GUGG- -5'
19761 3' -55.3 NC_004687.1 + 27512 0.66 0.927261
Target:  5'- gGGCCUUggcgGCAggCGuCCAGGUGUacUCGCCg -3'
miRNA:   3'- -CUGGGGa---CGUa-GU-GGUCUACG--AGUGG- -5'
19761 3' -55.3 NC_004687.1 + 122400 0.66 0.927261
Target:  5'- aACgCCCUGC-UCGCCgAGGcugUGUUUGCCa -3'
miRNA:   3'- cUG-GGGACGuAGUGG-UCU---ACGAGUGG- -5'
19761 3' -55.3 NC_004687.1 + 45353 0.66 0.927261
Target:  5'- cACCCCggccaGCAaCACCGcgcucaGCUCGCCg -3'
miRNA:   3'- cUGGGGa----CGUaGUGGUcua---CGAGUGG- -5'
19761 3' -55.3 NC_004687.1 + 113814 0.66 0.927261
Target:  5'- cGACCCCUGg--CGCgCGGAcggGCUCAaggcCCa -3'
miRNA:   3'- -CUGGGGACguaGUG-GUCUa--CGAGU----GG- -5'
19761 3' -55.3 NC_004687.1 + 44058 0.66 0.927261
Target:  5'- uGGCCCCaGUAggcCACCGGcuugGCcCGCCa -3'
miRNA:   3'- -CUGGGGaCGUa--GUGGUCua--CGaGUGG- -5'
19761 3' -55.3 NC_004687.1 + 120234 0.66 0.926724
Target:  5'- aGCCCCgGUuguugcgcucguaAUCACCcg--GCUCGCCg -3'
miRNA:   3'- cUGGGGaCG-------------UAGUGGucuaCGAGUGG- -5'
19761 3' -55.3 NC_004687.1 + 10842 0.66 0.921782
Target:  5'- cGGCCCgaGUGUCgAUCAGGccCUCACCu -3'
miRNA:   3'- -CUGGGgaCGUAG-UGGUCUacGAGUGG- -5'
19761 3' -55.3 NC_004687.1 + 149627 0.66 0.921782
Target:  5'- cGGCCCCgGUcgAUCugCAGcgucaguugcAUGCUCAUg -3'
miRNA:   3'- -CUGGGGaCG--UAGugGUC----------UACGAGUGg -5'
19761 3' -55.3 NC_004687.1 + 98384 0.66 0.921782
Target:  5'- aACaUCUGCGcgugCGCCAGGuaugcagccUGCUCGCCa -3'
miRNA:   3'- cUGgGGACGUa---GUGGUCU---------ACGAGUGG- -5'
19761 3' -55.3 NC_004687.1 + 144201 0.66 0.91606
Target:  5'- aACagCCUGUAUCGCCAGcgcgucgGCggCGCCg -3'
miRNA:   3'- cUGg-GGACGUAGUGGUCua-----CGa-GUGG- -5'
19761 3' -55.3 NC_004687.1 + 141152 0.66 0.91606
Target:  5'- gGugCCCaacgGCAUCGCCccgcuGGAUGC-CAUg -3'
miRNA:   3'- -CugGGGa---CGUAGUGG-----UCUACGaGUGg -5'
19761 3' -55.3 NC_004687.1 + 138473 0.66 0.91606
Target:  5'- cGAUCCCgauguccGaCAUCACCGG--GCUCAUCu -3'
miRNA:   3'- -CUGGGGa------C-GUAGUGGUCuaCGAGUGG- -5'
19761 3' -55.3 NC_004687.1 + 116723 0.66 0.91606
Target:  5'- gGACCCaCUcGCGgcccCGgCAGAUGCUCcaggACCu -3'
miRNA:   3'- -CUGGG-GA-CGUa---GUgGUCUACGAG----UGG- -5'
19761 3' -55.3 NC_004687.1 + 75583 0.66 0.91606
Target:  5'- cGGCCCCgGCcUCcauCCA---GCUCACCg -3'
miRNA:   3'- -CUGGGGaCGuAGu--GGUcuaCGAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.