miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19761 5' -55.6 NC_004687.1 + 107243 0.66 0.908111
Target:  5'- cGGGUggGCGCCucgguCUCGccguagGCCUGCaGGAc -3'
miRNA:   3'- uCCCGuuCGCGG-----GAGU------UGGAUG-CUUu -5'
19761 5' -55.6 NC_004687.1 + 71413 0.66 0.908111
Target:  5'- cGGGCAcccuGCGCCU--GACCUucuACGAGc -3'
miRNA:   3'- uCCCGUu---CGCGGGagUUGGA---UGCUUu -5'
19761 5' -55.6 NC_004687.1 + 88966 0.66 0.901762
Target:  5'- cGGGCAgcgcgggacGGUGUCCUCcACCU-CGGGc -3'
miRNA:   3'- uCCCGU---------UCGCGGGAGuUGGAuGCUUu -5'
19761 5' -55.6 NC_004687.1 + 105268 0.66 0.901762
Target:  5'- aAGGGCAcGGUGCCCgcuucGCCggugUACGGAGc -3'
miRNA:   3'- -UCCCGU-UCGCGGGagu--UGG----AUGCUUU- -5'
19761 5' -55.6 NC_004687.1 + 79269 0.66 0.895172
Target:  5'- uGGGCAGGCGCgaUCGACgCggugagcgGCGAGc -3'
miRNA:   3'- uCCCGUUCGCGggAGUUG-Ga-------UGCUUu -5'
19761 5' -55.6 NC_004687.1 + 135062 0.66 0.895172
Target:  5'- cGGGCcAGgGCCCggcgcgCGGCC-ACGAu- -3'
miRNA:   3'- uCCCGuUCgCGGGa-----GUUGGaUGCUuu -5'
19761 5' -55.6 NC_004687.1 + 138595 0.66 0.895172
Target:  5'- aAGGGUccGGGCGgUCUCAuCCUGCGc-- -3'
miRNA:   3'- -UCCCG--UUCGCgGGAGUuGGAUGCuuu -5'
19761 5' -55.6 NC_004687.1 + 55662 0.66 0.888342
Target:  5'- cGGGUcaAGGCGCCCgaCGAUCagaACGAGAa -3'
miRNA:   3'- uCCCG--UUCGCGGGa-GUUGGa--UGCUUU- -5'
19761 5' -55.6 NC_004687.1 + 36698 0.66 0.881277
Target:  5'- cAGGGCcaAGGUGCCCgagCGcACCgGCGGGu -3'
miRNA:   3'- -UCCCG--UUCGCGGGa--GU-UGGaUGCUUu -5'
19761 5' -55.6 NC_004687.1 + 124413 0.66 0.881277
Target:  5'- aGGGGUGuacGCGUCCUCGuCCU-CGGGAu -3'
miRNA:   3'- -UCCCGUu--CGCGGGAGUuGGAuGCUUU- -5'
19761 5' -55.6 NC_004687.1 + 43733 0.66 0.873982
Target:  5'- aAGGGC-GGUGCCUUCGgugGCCU-CGGu- -3'
miRNA:   3'- -UCCCGuUCGCGGGAGU---UGGAuGCUuu -5'
19761 5' -55.6 NC_004687.1 + 91477 0.66 0.873982
Target:  5'- cAGGaGCAGGaacaaugGCCCUC-ACCUACGc-- -3'
miRNA:   3'- -UCC-CGUUCg------CGGGAGuUGGAUGCuuu -5'
19761 5' -55.6 NC_004687.1 + 92670 0.67 0.866461
Target:  5'- uGGGUccAGGUGCCgUCGGgCUGCGGc- -3'
miRNA:   3'- uCCCG--UUCGCGGgAGUUgGAUGCUuu -5'
19761 5' -55.6 NC_004687.1 + 81465 0.67 0.866461
Target:  5'- aAGGGCAAGUccugauGCCgCUCAuCCUGCc--- -3'
miRNA:   3'- -UCCCGUUCG------CGG-GAGUuGGAUGcuuu -5'
19761 5' -55.6 NC_004687.1 + 42064 0.67 0.858721
Target:  5'- aAGGG-GAGCGgCCUCGACCa--GAAAg -3'
miRNA:   3'- -UCCCgUUCGCgGGAGUUGGaugCUUU- -5'
19761 5' -55.6 NC_004687.1 + 132482 0.67 0.858721
Target:  5'- cGGGGCAgcgGGCGCCUggaCGGCgcagGCGGAGa -3'
miRNA:   3'- -UCCCGU---UCGCGGGa--GUUGga--UGCUUU- -5'
19761 5' -55.6 NC_004687.1 + 152856 0.67 0.850768
Target:  5'- gGGGGCGGGCagGCaCacgaGACCUACGAGc -3'
miRNA:   3'- -UCCCGUUCG--CG-Ggag-UUGGAUGCUUu -5'
19761 5' -55.6 NC_004687.1 + 50791 0.67 0.842609
Target:  5'- ----aGGGCGCCUUCGAUCUGCGGGu -3'
miRNA:   3'- ucccgUUCGCGGGAGUUGGAUGCUUu -5'
19761 5' -55.6 NC_004687.1 + 38914 0.67 0.842609
Target:  5'- aAGGGCGGguccGCGUCC-CGAUCUaccGCGAGAu -3'
miRNA:   3'- -UCCCGUU----CGCGGGaGUUGGA---UGCUUU- -5'
19761 5' -55.6 NC_004687.1 + 114353 0.68 0.820482
Target:  5'- cGGGGCAagGuugccagcuucgucuGCGCCCcCAGCCUGCa--- -3'
miRNA:   3'- -UCCCGU--U---------------CGCGGGaGUUGGAUGcuuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.