miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19761 5' -55.6 NC_004687.1 + 123122 1.06 0.003792
Target:  5'- gAGGGCAAGCGCCCUCAACCUACGAAAg -3'
miRNA:   3'- -UCCCGUUCGCGGGAGUUGGAUGCUUU- -5'
19761 5' -55.6 NC_004687.1 + 69205 0.75 0.418723
Target:  5'- cGGGCAGgccacccagaccgguGCGCCCUgggacgaggagcuggCGACCUACGAGGa -3'
miRNA:   3'- uCCCGUU---------------CGCGGGA---------------GUUGGAUGCUUU- -5'
19761 5' -55.6 NC_004687.1 + 114549 0.74 0.486005
Target:  5'- cGGGCGAGCGCCCUCGguucaaguACC-AgGAc- -3'
miRNA:   3'- uCCCGUUCGCGGGAGU--------UGGaUgCUuu -5'
19761 5' -55.6 NC_004687.1 + 7929 0.73 0.505602
Target:  5'- cGaGGUAGGCGUCCUgGACCgugGCGAAc -3'
miRNA:   3'- uC-CCGUUCGCGGGAgUUGGa--UGCUUu -5'
19761 5' -55.6 NC_004687.1 + 80447 0.73 0.525532
Target:  5'- cGGGCccAGGCGCCC-CGGCCUccaccgACGAGGu -3'
miRNA:   3'- uCCCG--UUCGCGGGaGUUGGA------UGCUUU- -5'
19761 5' -55.6 NC_004687.1 + 102101 0.73 0.544733
Target:  5'- cAGGGCAAGCugcucGCUCUCGGCCUucuuggccucgcgGCGGGc -3'
miRNA:   3'- -UCCCGUUCG-----CGGGAGUUGGA-------------UGCUUu -5'
19761 5' -55.6 NC_004687.1 + 3809 0.72 0.566212
Target:  5'- cGGauGCGGGUGCCCaUCAGCCaGCGAAu -3'
miRNA:   3'- uCC--CGUUCGCGGG-AGUUGGaUGCUUu -5'
19761 5' -55.6 NC_004687.1 + 32635 0.72 0.576518
Target:  5'- cGGcGCuuGCGCuCCUCGACCUGCGc-- -3'
miRNA:   3'- uCC-CGuuCGCG-GGAGUUGGAUGCuuu -5'
19761 5' -55.6 NC_004687.1 + 153422 0.72 0.597247
Target:  5'- uGGGCGGGCGUgguuCCUCAguacgGCCUGCaGAGGa -3'
miRNA:   3'- uCCCGUUCGCG----GGAGU-----UGGAUG-CUUU- -5'
19761 5' -55.6 NC_004687.1 + 56654 0.71 0.649399
Target:  5'- uGGGGCGacgagaacGGCaacaucagcuacGCCCUCAACC-ACGAGGg -3'
miRNA:   3'- -UCCCGU--------UCG------------CGGGAGUUGGaUGCUUU- -5'
19761 5' -55.6 NC_004687.1 + 43799 0.7 0.670218
Target:  5'- uGGGGCAAGUggGCCUUCcagcgccggauGACCUACGu-- -3'
miRNA:   3'- -UCCCGUUCG--CGGGAG-----------UUGGAUGCuuu -5'
19761 5' -55.6 NC_004687.1 + 41584 0.7 0.680584
Target:  5'- cGGGCGAGuCGCCCcgUAGCCgcuUugGAGGa -3'
miRNA:   3'- uCCCGUUC-GCGGGa-GUUGG---AugCUUU- -5'
19761 5' -55.6 NC_004687.1 + 50665 0.7 0.680584
Target:  5'- cGGGCAccGUGCCCuUCGGCCUGuCGGc- -3'
miRNA:   3'- uCCCGUu-CGCGGG-AGUUGGAU-GCUuu -5'
19761 5' -55.6 NC_004687.1 + 149538 0.7 0.680584
Target:  5'- uGGGCAAGCGCCUggaugCGGCUcgUACGc-- -3'
miRNA:   3'- uCCCGUUCGCGGGa----GUUGG--AUGCuuu -5'
19761 5' -55.6 NC_004687.1 + 79798 0.7 0.690909
Target:  5'- cGGGCAuGCG-CCUCAACCUGguCGGc- -3'
miRNA:   3'- uCCCGUuCGCgGGAGUUGGAU--GCUuu -5'
19761 5' -55.6 NC_004687.1 + 118161 0.7 0.690909
Target:  5'- -aGGUggGCGCCUUCGACUUcaccgGCGAGc -3'
miRNA:   3'- ucCCGuuCGCGGGAGUUGGA-----UGCUUu -5'
19761 5' -55.6 NC_004687.1 + 10716 0.7 0.690909
Target:  5'- uGGGGUcGGCGCCCU-GGCCaGCGGc- -3'
miRNA:   3'- -UCCCGuUCGCGGGAgUUGGaUGCUuu -5'
19761 5' -55.6 NC_004687.1 + 141962 0.69 0.721539
Target:  5'- cGGGGCGAcCGUCCUCGugCU-CGAc- -3'
miRNA:   3'- -UCCCGUUcGCGGGAGUugGAuGCUuu -5'
19761 5' -55.6 NC_004687.1 + 114706 0.69 0.731602
Target:  5'- ---uCGGGUGCCCUCAACCUugGCGAu- -3'
miRNA:   3'- ucccGUUCGCGGGAGUUGGA--UGCUuu -5'
19761 5' -55.6 NC_004687.1 + 30320 0.69 0.731602
Target:  5'- cGGuGCuGGCGCCCUCGGCCagggccucACGGGc -3'
miRNA:   3'- uCC-CGuUCGCGGGAGUUGGa-------UGCUUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.