miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19762 3' -57.7 NC_004687.1 + 144254 0.66 0.854883
Target:  5'- cGGCGaacacgccgucCUcgaCCGGG-UAGAAGCCCAGCc -3'
miRNA:   3'- uCCGC-----------GA---GGUCCuGUCUUCGGGUUGc -5'
19762 3' -57.7 NC_004687.1 + 86909 0.66 0.854883
Target:  5'- -cGCGCUCCAGGcugguCAGc-GCCaCGAUGg -3'
miRNA:   3'- ucCGCGAGGUCCu----GUCuuCGG-GUUGC- -5'
19762 3' -57.7 NC_004687.1 + 128249 0.66 0.854883
Target:  5'- uGGUGCagCCAGGugAGugaugcGCCCGAa- -3'
miRNA:   3'- uCCGCGa-GGUCCugUCuu----CGGGUUgc -5'
19762 3' -57.7 NC_004687.1 + 120838 0.66 0.854883
Target:  5'- gAGGCcgaUCCAGGcgGCGGGauGGCuCCAGCa -3'
miRNA:   3'- -UCCGcg-AGGUCC--UGUCU--UCG-GGUUGc -5'
19762 3' -57.7 NC_004687.1 + 74404 0.66 0.854883
Target:  5'- uGGGCGCUCaacaAGGuGCAGGAcgUCGGCGa -3'
miRNA:   3'- -UCCGCGAGg---UCC-UGUCUUcgGGUUGC- -5'
19762 3' -57.7 NC_004687.1 + 137148 0.66 0.854883
Target:  5'- cGGGCGaccucgucgucCUcCCAGGGC---AGCCCGGCGc -3'
miRNA:   3'- -UCCGC-----------GA-GGUCCUGucuUCGGGUUGC- -5'
19762 3' -57.7 NC_004687.1 + 44493 0.66 0.854883
Target:  5'- cGGCGUcgacCCAGGACAGcuGgUCGAUGa -3'
miRNA:   3'- uCCGCGa---GGUCCUGUCuuCgGGUUGC- -5'
19762 3' -57.7 NC_004687.1 + 116656 0.66 0.854109
Target:  5'- uGGCGCagggCCAGGguggacuGCAGGugcugggccAGCuCCGGCGg -3'
miRNA:   3'- uCCGCGa---GGUCC-------UGUCU---------UCG-GGUUGC- -5'
19762 3' -57.7 NC_004687.1 + 101486 0.66 0.850205
Target:  5'- cGGC-CUCCAGGGCGGcgauccucgccuccAGCUUGGCGa -3'
miRNA:   3'- uCCGcGAGGUCCUGUCu-------------UCGGGUUGC- -5'
19762 3' -57.7 NC_004687.1 + 23065 0.66 0.847048
Target:  5'- -uGCGCUCCuGGACccGGAAGgCCuucuCGg -3'
miRNA:   3'- ucCGCGAGGuCCUG--UCUUCgGGuu--GC- -5'
19762 3' -57.7 NC_004687.1 + 145034 0.66 0.847048
Target:  5'- cGGCGUgcugCCGGGuacacCAGAcAGCuCCAGCu -3'
miRNA:   3'- uCCGCGa---GGUCCu----GUCU-UCG-GGUUGc -5'
19762 3' -57.7 NC_004687.1 + 113323 0.66 0.847048
Target:  5'- gGGGCccacGCUUCGcGGACAau-GCCCAGCu -3'
miRNA:   3'- -UCCG----CGAGGU-CCUGUcuuCGGGUUGc -5'
19762 3' -57.7 NC_004687.1 + 121037 0.66 0.847048
Target:  5'- cGGCgaugagcuGCUCCAGGGugccCGGAggcaGGCCCAGg- -3'
miRNA:   3'- uCCG--------CGAGGUCCU----GUCU----UCGGGUUgc -5'
19762 3' -57.7 NC_004687.1 + 106199 0.66 0.847048
Target:  5'- gAGGCcaaGCUCUccgaugAGGAgcUGGAGGUCCGGCGu -3'
miRNA:   3'- -UCCG---CGAGG------UCCU--GUCUUCGGGUUGC- -5'
19762 3' -57.7 NC_004687.1 + 115903 0.66 0.846253
Target:  5'- cAGGCGCUcaacgCCAGGAUguccaAGAucaaccuggccaaGGUCCGGCu -3'
miRNA:   3'- -UCCGCGA-----GGUCCUG-----UCU-------------UCGGGUUGc -5'
19762 3' -57.7 NC_004687.1 + 55435 0.66 0.83902
Target:  5'- cGGCccaugaCUCCaccaAGGACGu-GGCCCAGCGg -3'
miRNA:   3'- uCCGc-----GAGG----UCCUGUcuUCGGGUUGC- -5'
19762 3' -57.7 NC_004687.1 + 55657 0.66 0.83902
Target:  5'- ---gGUUCCGGGucaAGgcGCCCGACGa -3'
miRNA:   3'- uccgCGAGGUCCug-UCuuCGGGUUGC- -5'
19762 3' -57.7 NC_004687.1 + 18711 0.66 0.83902
Target:  5'- uGGuGCGCUCCAcgauggugguGGGCAGccgguGCUCAugGu -3'
miRNA:   3'- -UC-CGCGAGGU----------CCUGUCuu---CGGGUugC- -5'
19762 3' -57.7 NC_004687.1 + 89676 0.66 0.830806
Target:  5'- cGGCGC-CUc-GACGGu-GCCCGACGg -3'
miRNA:   3'- uCCGCGaGGucCUGUCuuCGGGUUGC- -5'
19762 3' -57.7 NC_004687.1 + 66371 0.66 0.830806
Target:  5'- -cGCGUUCCugaugcaccAGGGCcugauGAAGCUCAACGu -3'
miRNA:   3'- ucCGCGAGG---------UCCUGu----CUUCGGGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.