miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19762 5' -56.1 NC_004687.1 + 24753 0.66 0.887237
Target:  5'- cGCGC-CGAACGCaGCgUaGaACGCAGc -3'
miRNA:   3'- aCGCGaGCUUGCGaCGgAaC-UGCGUU- -5'
19762 5' -56.1 NC_004687.1 + 87316 0.66 0.887237
Target:  5'- cGCGCUUGGACuccuugaugGCCUUGGCGa-- -3'
miRNA:   3'- aCGCGAGCUUGcga------CGGAACUGCguu -5'
19762 5' -56.1 NC_004687.1 + 118303 0.66 0.887237
Target:  5'- gGUGUUCugGAGCGCagcaGCCUgGGCGCGGg -3'
miRNA:   3'- aCGCGAG--CUUGCGa---CGGAaCUGCGUU- -5'
19762 5' -56.1 NC_004687.1 + 30280 0.66 0.887237
Target:  5'- gGCGCUCGAcCGCUuucugGCCUccaACGCc- -3'
miRNA:   3'- aCGCGAGCUuGCGA-----CGGAac-UGCGuu -5'
19762 5' -56.1 NC_004687.1 + 153114 0.66 0.880162
Target:  5'- aGCuaCUCGGAggggcaggUGCUGCCaucgUGGCGCAAg -3'
miRNA:   3'- aCGc-GAGCUU--------GCGACGGa---ACUGCGUU- -5'
19762 5' -56.1 NC_004687.1 + 38459 0.66 0.872858
Target:  5'- aGuCGCUC-AACGCcGCCcagGACGCGGu -3'
miRNA:   3'- aC-GCGAGcUUGCGaCGGaa-CUGCGUU- -5'
19762 5' -56.1 NC_004687.1 + 9713 0.66 0.865332
Target:  5'- uUGCGCUCG-AC-CUGCUU--ACGCAGc -3'
miRNA:   3'- -ACGCGAGCuUGcGACGGAacUGCGUU- -5'
19762 5' -56.1 NC_004687.1 + 149601 0.67 0.849634
Target:  5'- cGCGC-CGGACGUcgGCCUcGACGa-- -3'
miRNA:   3'- aCGCGaGCUUGCGa-CGGAaCUGCguu -5'
19762 5' -56.1 NC_004687.1 + 134777 0.67 0.841476
Target:  5'- gGUGCUCGGGacgcggUGCUGCCagaUGuCGCGAu -3'
miRNA:   3'- aCGCGAGCUU------GCGACGGa--ACuGCGUU- -5'
19762 5' -56.1 NC_004687.1 + 85366 0.67 0.840649
Target:  5'- cGCGCUCGGuaucGCGCUgggcGCCUUcggcaucGGCGUg- -3'
miRNA:   3'- aCGCGAGCU----UGCGA----CGGAA-------CUGCGuu -5'
19762 5' -56.1 NC_004687.1 + 94058 0.67 0.832276
Target:  5'- aGCGCcCGAGCGgUGCCgucguccUUGAacCGCAGc -3'
miRNA:   3'- aCGCGaGCUUGCgACGG-------AACU--GCGUU- -5'
19762 5' -56.1 NC_004687.1 + 133503 0.67 0.814088
Target:  5'- cGCGCUCGAugGCUcuugGCCUcaccuucucuCGCGg -3'
miRNA:   3'- aCGCGAGCUugCGA----CGGAacu-------GCGUu -5'
19762 5' -56.1 NC_004687.1 + 79728 0.67 0.806957
Target:  5'- cUGCGCUUGAagccgACGCcGuCCUUGagguuGCGCAGg -3'
miRNA:   3'- -ACGCGAGCU-----UGCGaC-GGAAC-----UGCGUU- -5'
19762 5' -56.1 NC_004687.1 + 48941 0.67 0.806957
Target:  5'- cGCGCUCGGccuCGCggGCCc-GGCGCu- -3'
miRNA:   3'- aCGCGAGCUu--GCGa-CGGaaCUGCGuu -5'
19762 5' -56.1 NC_004687.1 + 73805 0.67 0.806957
Target:  5'- cGCGCUaccGGCGCUGCCgc--CGCGAc -3'
miRNA:   3'- aCGCGAgc-UUGCGACGGaacuGCGUU- -5'
19762 5' -56.1 NC_004687.1 + 59341 0.68 0.788682
Target:  5'- gGCGCUCGAugacaugcaGCGCUGggugGACGCu- -3'
miRNA:   3'- aCGCGAGCU---------UGCGACggaaCUGCGuu -5'
19762 5' -56.1 NC_004687.1 + 6784 0.68 0.787752
Target:  5'- gUGCGUUCGcugcgguAACGCUGCCU---CGCGg -3'
miRNA:   3'- -ACGCGAGC-------UUGCGACGGAacuGCGUu -5'
19762 5' -56.1 NC_004687.1 + 63581 0.68 0.779321
Target:  5'- uUGCGC-CGAgAUGCgGCCUUGAuCGCc- -3'
miRNA:   3'- -ACGCGaGCU-UGCGaCGGAACU-GCGuu -5'
19762 5' -56.1 NC_004687.1 + 125655 0.68 0.769824
Target:  5'- aGCGgUCGAGCGcCUGCUugUUGAgGCc- -3'
miRNA:   3'- aCGCgAGCUUGC-GACGG--AACUgCGuu -5'
19762 5' -56.1 NC_004687.1 + 151947 0.68 0.769824
Target:  5'- cGCGCgCGAGCGCgGCCUcuucggccucgaUGAUGguGa -3'
miRNA:   3'- aCGCGaGCUUGCGaCGGA------------ACUGCguU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.