miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19763 3' -52.5 NC_004687.1 + 136752 0.66 0.983779
Target:  5'- -gGGCGcUG--GCGaACGACUGCUCGc -3'
miRNA:   3'- aaCCGCuACagUGC-UGCUGAUGAGCu -5'
19763 3' -52.5 NC_004687.1 + 108058 0.66 0.983779
Target:  5'- -cGGCGGaGUCAuCGGuccugcCGAgCUGCUCGAc -3'
miRNA:   3'- aaCCGCUaCAGU-GCU------GCU-GAUGAGCU- -5'
19763 3' -52.5 NC_004687.1 + 105889 0.66 0.981788
Target:  5'- -cGGCGAUGUCGucucCGGCGuugUUGC-CGAa -3'
miRNA:   3'- aaCCGCUACAGU----GCUGCu--GAUGaGCU- -5'
19763 3' -52.5 NC_004687.1 + 141054 0.66 0.981788
Target:  5'- aUGGCGAagGUcucCugGGCGuuCUGCUUGAc -3'
miRNA:   3'- aACCGCUa-CA---GugCUGCu-GAUGAGCU- -5'
19763 3' -52.5 NC_004687.1 + 82110 0.66 0.981788
Target:  5'- -cGGCaGcgGUCGCGGCGGCaGCgcCGGu -3'
miRNA:   3'- aaCCG-CuaCAGUGCUGCUGaUGa-GCU- -5'
19763 3' -52.5 NC_004687.1 + 139708 0.66 0.981579
Target:  5'- -gGGCGAaggccUGUCGCGGCGcaGCUucuucuugcgcauGCUUGGg -3'
miRNA:   3'- aaCCGCU-----ACAGUGCUGC--UGA-------------UGAGCU- -5'
19763 3' -52.5 NC_004687.1 + 20799 0.66 0.981157
Target:  5'- -cGGCGcUGUCGuCGACGAaccagaacuccagggGCUCGGu -3'
miRNA:   3'- aaCCGCuACAGU-GCUGCUga-------------UGAGCU- -5'
19763 3' -52.5 NC_004687.1 + 33577 0.66 0.977265
Target:  5'- cUGGCGAUGUCGaggaGCGuCUuuUCGAu -3'
miRNA:   3'- aACCGCUACAGUgc--UGCuGAugAGCU- -5'
19763 3' -52.5 NC_004687.1 + 154661 0.66 0.977265
Target:  5'- aUGGuUGAUGUagcgcCACucCGGCUGCUCGGc -3'
miRNA:   3'- aACC-GCUACA-----GUGcuGCUGAUGAGCU- -5'
19763 3' -52.5 NC_004687.1 + 42163 0.66 0.974716
Target:  5'- -cGGCGGUGUUcaacucgaccgGCGACGAuccCUGCaUCGu -3'
miRNA:   3'- aaCCGCUACAG-----------UGCUGCU---GAUG-AGCu -5'
19763 3' -52.5 NC_004687.1 + 86093 0.66 0.974716
Target:  5'- cUUGGUGAg--CGCGGCGACggcCUUGGu -3'
miRNA:   3'- -AACCGCUacaGUGCUGCUGau-GAGCU- -5'
19763 3' -52.5 NC_004687.1 + 117116 0.66 0.974716
Target:  5'- -cGGCGggGUCAagGACGACcUGCUgGc -3'
miRNA:   3'- aaCCGCuaCAGUg-CUGCUG-AUGAgCu -5'
19763 3' -52.5 NC_004687.1 + 141431 0.66 0.974716
Target:  5'- -cGGCGAgaucGUCGCGcGCGGC--CUCGGg -3'
miRNA:   3'- aaCCGCUa---CAGUGC-UGCUGauGAGCU- -5'
19763 3' -52.5 NC_004687.1 + 124780 0.67 0.971965
Target:  5'- -cGGCGggGUCGCGAuCG--UACUCGc -3'
miRNA:   3'- aaCCGCuaCAGUGCU-GCugAUGAGCu -5'
19763 3' -52.5 NC_004687.1 + 95272 0.67 0.971965
Target:  5'- gUUGGCGAUGUUGacguucucccCGACGGCcacCUUGAc -3'
miRNA:   3'- -AACCGCUACAGU----------GCUGCUGau-GAGCU- -5'
19763 3' -52.5 NC_004687.1 + 71018 0.67 0.971965
Target:  5'- -gGGCccGggGUCuCGACGACcuccgGCUCGAc -3'
miRNA:   3'- aaCCG--CuaCAGuGCUGCUGa----UGAGCU- -5'
19763 3' -52.5 NC_004687.1 + 120628 0.67 0.971678
Target:  5'- -gGGCGggGUgACGuCGAgcggauucucggcCUGCUCGAc -3'
miRNA:   3'- aaCCGCuaCAgUGCuGCU-------------GAUGAGCU- -5'
19763 3' -52.5 NC_004687.1 + 14278 0.67 0.969004
Target:  5'- gUGGCGGUGUCAgGAuCGACc---CGAc -3'
miRNA:   3'- aACCGCUACAGUgCU-GCUGaugaGCU- -5'
19763 3' -52.5 NC_004687.1 + 34832 0.67 0.965828
Target:  5'- gUGGUGG-GUC-CGGuCGACaUACUCGAc -3'
miRNA:   3'- aACCGCUaCAGuGCU-GCUG-AUGAGCU- -5'
19763 3' -52.5 NC_004687.1 + 150190 0.67 0.965828
Target:  5'- -gGGCG--GUCACGAUGGuCUcGCUCGGc -3'
miRNA:   3'- aaCCGCuaCAGUGCUGCU-GA-UGAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.