miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19763 5' -53.4 NC_004687.1 + 17531 0.66 0.98278
Target:  5'- cCCUCGGGacgaccucGUcGUgGGCGCCGUCuacgaacuGCGc -3'
miRNA:   3'- -GGAGCUU--------CAaCAgCUGCGGCAGu-------CGC- -5'
19763 5' -53.4 NC_004687.1 + 30175 0.66 0.98278
Target:  5'- gCUCGAccgccGGUgGUCGGugcucgacgccCGCCGUCAGg- -3'
miRNA:   3'- gGAGCU-----UCAaCAGCU-----------GCGGCAGUCgc -5'
19763 5' -53.4 NC_004687.1 + 118890 0.66 0.98278
Target:  5'- aCC-CGccauc--CGGCGCCGUCGGCGa -3'
miRNA:   3'- -GGaGCuucaacaGCUGCGGCAGUCGC- -5'
19763 5' -53.4 NC_004687.1 + 146842 0.66 0.980755
Target:  5'- aCUCGA--UUGUCGACuUCGUCGuGCa -3'
miRNA:   3'- gGAGCUucAACAGCUGcGGCAGU-CGc -5'
19763 5' -53.4 NC_004687.1 + 89352 0.66 0.980755
Target:  5'- -aUCGgcGUaGUCG-CGCCgGUCGGUGu -3'
miRNA:   3'- ggAGCuuCAaCAGCuGCGG-CAGUCGC- -5'
19763 5' -53.4 NC_004687.1 + 18203 0.66 0.980755
Target:  5'- uCCUUGAGGUcgucauaGUCGACGUCGaagUCgGGCa -3'
miRNA:   3'- -GGAGCUUCAa------CAGCUGCGGC---AG-UCGc -5'
19763 5' -53.4 NC_004687.1 + 89743 0.66 0.978557
Target:  5'- uCCUgGAAGacgaaGUCGGCGUCGUCGa-- -3'
miRNA:   3'- -GGAgCUUCaa---CAGCUGCGGCAGUcgc -5'
19763 5' -53.4 NC_004687.1 + 89525 0.66 0.978557
Target:  5'- aCCUgGAAGgccUCGACGCCGaCGacgucGCGa -3'
miRNA:   3'- -GGAgCUUCaacAGCUGCGGCaGU-----CGC- -5'
19763 5' -53.4 NC_004687.1 + 66132 0.66 0.978557
Target:  5'- cUCUUGAAGaugGUCGcgguggUGUCGUCGGCGc -3'
miRNA:   3'- -GGAGCUUCaa-CAGCu-----GCGGCAGUCGC- -5'
19763 5' -53.4 NC_004687.1 + 48789 0.66 0.978557
Target:  5'- gCUCGAcgAGgacGUCGGCGCCGgacggGGCc -3'
miRNA:   3'- gGAGCU--UCaa-CAGCUGCGGCag---UCGc -5'
19763 5' -53.4 NC_004687.1 + 142387 0.66 0.978557
Target:  5'- uUCUCGgcGgcgacGUCGAaGgCGUCGGCGa -3'
miRNA:   3'- -GGAGCuuCaa---CAGCUgCgGCAGUCGC- -5'
19763 5' -53.4 NC_004687.1 + 46974 0.66 0.978557
Target:  5'- uUUUGAAGcUUaGUCGACGUCuUCGGCa -3'
miRNA:   3'- gGAGCUUC-AA-CAGCUGCGGcAGUCGc -5'
19763 5' -53.4 NC_004687.1 + 99973 0.66 0.978557
Target:  5'- aCCUgGcuGagGUCGGCGCCGU--GCGg -3'
miRNA:   3'- -GGAgCuuCaaCAGCUGCGGCAguCGC- -5'
19763 5' -53.4 NC_004687.1 + 97314 0.66 0.976178
Target:  5'- cCCUCGggGUUcUUG-CGCCaGUacucCGGCGg -3'
miRNA:   3'- -GGAGCuuCAAcAGCuGCGG-CA----GUCGC- -5'
19763 5' -53.4 NC_004687.1 + 125534 0.66 0.976178
Target:  5'- gCUCGgcGacGUCGACGCCuacaUgGGCGg -3'
miRNA:   3'- gGAGCuuCaaCAGCUGCGGc---AgUCGC- -5'
19763 5' -53.4 NC_004687.1 + 4004 0.66 0.976178
Target:  5'- --aCGAuucccUCGAUGCCGUCAGCc -3'
miRNA:   3'- ggaGCUucaacAGCUGCGGCAGUCGc -5'
19763 5' -53.4 NC_004687.1 + 6274 0.66 0.976178
Target:  5'- -gUCGAGGcucUCGGaGCCGUCGGUGa -3'
miRNA:   3'- ggAGCUUCaacAGCUgCGGCAGUCGC- -5'
19763 5' -53.4 NC_004687.1 + 28302 0.66 0.976178
Target:  5'- -aUUGggGUcGUCGGCGaCGUCAGg- -3'
miRNA:   3'- ggAGCuuCAaCAGCUGCgGCAGUCgc -5'
19763 5' -53.4 NC_004687.1 + 21858 0.66 0.976178
Target:  5'- aCUCGAuGUUGUaGACGCacugGUgCAGCa -3'
miRNA:   3'- gGAGCUuCAACAgCUGCGg---CA-GUCGc -5'
19763 5' -53.4 NC_004687.1 + 66382 0.66 0.976178
Target:  5'- cCCagCGGAucg--CGACGUCGUCGGCGu -3'
miRNA:   3'- -GGa-GCUUcaacaGCUGCGGCAGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.