miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19763 5' -53.4 NC_004687.1 + 2911 0.7 0.882927
Target:  5'- gCUUCGA---UGUCGACGCCGaugUgGGCGc -3'
miRNA:   3'- -GGAGCUucaACAGCUGCGGC---AgUCGC- -5'
19763 5' -53.4 NC_004687.1 + 3111 0.68 0.938239
Target:  5'- gCCUCGAucauggcgucgaugcGGUUGUCGGacucgaacugGCCGaccugCAGCGg -3'
miRNA:   3'- -GGAGCU---------------UCAACAGCUg---------CGGCa----GUCGC- -5'
19763 5' -53.4 NC_004687.1 + 4004 0.66 0.976178
Target:  5'- --aCGAuucccUCGAUGCCGUCAGCc -3'
miRNA:   3'- ggaGCUucaacAGCUGCGGCAGUCGc -5'
19763 5' -53.4 NC_004687.1 + 5638 0.73 0.747337
Target:  5'- aCCUCGAuguccuugcGGUUGUCGucguCGCCGcgcauaaagaUCGGCa -3'
miRNA:   3'- -GGAGCU---------UCAACAGCu---GCGGC----------AGUCGc -5'
19763 5' -53.4 NC_004687.1 + 6048 0.67 0.964718
Target:  5'- uCCUCGuAGcgcUUGUgGGCGUCGgcgaCGGCGa -3'
miRNA:   3'- -GGAGCuUC---AACAgCUGCGGCa---GUCGC- -5'
19763 5' -53.4 NC_004687.1 + 6274 0.66 0.976178
Target:  5'- -gUCGAGGcucUCGGaGCCGUCGGUGa -3'
miRNA:   3'- ggAGCUUCaacAGCUgCGGCAGUCGC- -5'
19763 5' -53.4 NC_004687.1 + 10711 0.68 0.931323
Target:  5'- -gUCGuuGggGUCGGCGCCcugGcCAGCGg -3'
miRNA:   3'- ggAGCuuCaaCAGCUGCGG---CaGUCGC- -5'
19763 5' -53.4 NC_004687.1 + 11816 0.69 0.908997
Target:  5'- gCUgGAAGacGcCGACGCUGUUGGCGu -3'
miRNA:   3'- gGAgCUUCaaCaGCUGCGGCAGUCGC- -5'
19763 5' -53.4 NC_004687.1 + 13796 0.67 0.967888
Target:  5'- --cCGGAGUUGggcACGCCGUCgcuGGCGu -3'
miRNA:   3'- ggaGCUUCAACagcUGCGGCAG---UCGC- -5'
19763 5' -53.4 NC_004687.1 + 14065 0.69 0.902825
Target:  5'- gUCUCGGcgccGUUGUCGACGuaGaUCAGCc -3'
miRNA:   3'- -GGAGCUu---CAACAGCUGCggC-AGUCGc -5'
19763 5' -53.4 NC_004687.1 + 14347 0.66 0.973611
Target:  5'- gCCUCGuuGUUGaUGAUGCCGaUGGUGc -3'
miRNA:   3'- -GGAGCuuCAACaGCUGCGGCaGUCGC- -5'
19763 5' -53.4 NC_004687.1 + 15117 0.67 0.957361
Target:  5'- aCUCGAacuccaccgagauGG-UGUUGACGCCgGUCGGgCGc -3'
miRNA:   3'- gGAGCU-------------UCaACAGCUGCGG-CAGUC-GC- -5'
19763 5' -53.4 NC_004687.1 + 15209 0.73 0.717978
Target:  5'- aCgUCGAGGgUGUUGAgGCCGUgGGUGa -3'
miRNA:   3'- -GgAGCUUCaACAGCUgCGGCAgUCGC- -5'
19763 5' -53.4 NC_004687.1 + 15461 0.67 0.961335
Target:  5'- --cCGGAGUUGUUggucugcugccaGAUGCUGUUGGCGu -3'
miRNA:   3'- ggaGCUUCAACAG------------CUGCGGCAGUCGC- -5'
19763 5' -53.4 NC_004687.1 + 16405 0.7 0.861039
Target:  5'- aCgUCGGAcUUGUCGGCcUUGUCAGCGa -3'
miRNA:   3'- -GgAGCUUcAACAGCUGcGGCAGUCGC- -5'
19763 5' -53.4 NC_004687.1 + 17472 0.7 0.882927
Target:  5'- -aUCGggG-UGUCGGCGUcacgggcgcccaCGUCGGCa -3'
miRNA:   3'- ggAGCuuCaACAGCUGCG------------GCAGUCGc -5'
19763 5' -53.4 NC_004687.1 + 17531 0.66 0.98278
Target:  5'- cCCUCGGGacgaccucGUcGUgGGCGCCGUCuacgaacuGCGc -3'
miRNA:   3'- -GGAGCUU--------CAaCAgCUGCGGCAGu-------CGC- -5'
19763 5' -53.4 NC_004687.1 + 17577 0.67 0.97085
Target:  5'- -----cAGUUGUCGAUGuuGcUCGGCGg -3'
miRNA:   3'- ggagcuUCAACAGCUGCggC-AGUCGC- -5'
19763 5' -53.4 NC_004687.1 + 18203 0.66 0.980755
Target:  5'- uCCUUGAGGUcgucauaGUCGACGUCGaagUCgGGCa -3'
miRNA:   3'- -GGAGCUUCAa------CAGCUGCGGC---AG-UCGc -5'
19763 5' -53.4 NC_004687.1 + 20784 0.66 0.973611
Target:  5'- cCCg-GAAGUcgucGUCGGCGCUGUCGuCGa -3'
miRNA:   3'- -GGagCUUCAa---CAGCUGCGGCAGUcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.