miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19764 3' -59.3 NC_004687.1 + 138610 0.66 0.781307
Target:  5'- uCAgGGuGGCCA--GCUCguugagagcgacagCGGCCCGg -3'
miRNA:   3'- uGUgCCuCCGGUaaCGAGa-------------GCCGGGU- -5'
19764 3' -59.3 NC_004687.1 + 83911 0.66 0.778568
Target:  5'- uGCAuCGGAuGGCCGUgcuggucgacaugcgGCUCgcgCGGCUCc -3'
miRNA:   3'- -UGU-GCCU-CCGGUAa--------------CGAGa--GCCGGGu -5'
19764 3' -59.3 NC_004687.1 + 98219 0.66 0.777653
Target:  5'- ---aGGGGGCCAUgcagGCcgUUCGGCgCAa -3'
miRNA:   3'- ugugCCUCCGGUAa---CGa-GAGCCGgGU- -5'
19764 3' -59.3 NC_004687.1 + 7143 0.66 0.777653
Target:  5'- cCAUGGuGGCCGUUGCggcgcgaugCUCGaCCUg -3'
miRNA:   3'- uGUGCCuCCGGUAACGa--------GAGCcGGGu -5'
19764 3' -59.3 NC_004687.1 + 90856 0.66 0.768427
Target:  5'- cGCACGGucGCCGcgcaGCUgggUGGCCCAg -3'
miRNA:   3'- -UGUGCCucCGGUaa--CGAga-GCCGGGU- -5'
19764 3' -59.3 NC_004687.1 + 112789 0.66 0.768427
Target:  5'- --uCGGucaucaAGGCCAcUGCUCUCGGaguuuCCCGu -3'
miRNA:   3'- uguGCC------UCCGGUaACGAGAGCC-----GGGU- -5'
19764 3' -59.3 NC_004687.1 + 20170 0.66 0.749632
Target:  5'- cGC-CGGAccagaucgaaGGCC--UGCUCaCGGCCCGg -3'
miRNA:   3'- -UGuGCCU----------CCGGuaACGAGaGCCGGGU- -5'
19764 3' -59.3 NC_004687.1 + 78406 0.66 0.749632
Target:  5'- gGCGCGGccugucAGGCag-UGCagcgCUCGGCCUu -3'
miRNA:   3'- -UGUGCC------UCCGguaACGa---GAGCCGGGu -5'
19764 3' -59.3 NC_004687.1 + 54182 0.66 0.748681
Target:  5'- uGCugGGgccacccAGGCCGcUGCUCggUCGGCUa- -3'
miRNA:   3'- -UGugCC-------UCCGGUaACGAG--AGCCGGgu -5'
19764 3' -59.3 NC_004687.1 + 21320 0.67 0.72071
Target:  5'- gGCAUGGAGGCCAacgggUGgUCUCagGGCg-- -3'
miRNA:   3'- -UGUGCCUCCGGUa----ACgAGAG--CCGggu -5'
19764 3' -59.3 NC_004687.1 + 72990 0.67 0.671147
Target:  5'- gACuCGGAcgauGCCAUUGgcCUUUCGGCCCu -3'
miRNA:   3'- -UGuGCCUc---CGGUAAC--GAGAGCCGGGu -5'
19764 3' -59.3 NC_004687.1 + 80270 0.68 0.661109
Target:  5'- aGC-CcGAGGCCGgacaggUGuCUCUCGGCUCGg -3'
miRNA:   3'- -UGuGcCUCCGGUa-----AC-GAGAGCCGGGU- -5'
19764 3' -59.3 NC_004687.1 + 124346 0.68 0.661109
Target:  5'- uACACGGAcGGCC--UGCa---GGCCCAg -3'
miRNA:   3'- -UGUGCCU-CCGGuaACGagagCCGGGU- -5'
19764 3' -59.3 NC_004687.1 + 139677 0.68 0.651047
Target:  5'- cGCGCGGGGGUCcagGCgggCUgGGCCa- -3'
miRNA:   3'- -UGUGCCUCCGGuaaCGa--GAgCCGGgu -5'
19764 3' -59.3 NC_004687.1 + 2218 0.68 0.640971
Target:  5'- gGCAUGGAuGCCcgcGCgauggucCUCGGCCCAg -3'
miRNA:   3'- -UGUGCCUcCGGuaaCGa------GAGCCGGGU- -5'
19764 3' -59.3 NC_004687.1 + 120427 0.68 0.62988
Target:  5'- cAUACGGAuggccucGGCCAcgUGCUCguagugcuugCGGCUCAu -3'
miRNA:   3'- -UGUGCCU-------CCGGUa-ACGAGa---------GCCGGGU- -5'
19764 3' -59.3 NC_004687.1 + 116754 0.69 0.569668
Target:  5'- -uGCGGuGGCCAUgGCUUcugcaccgucucgUCGGCCUg -3'
miRNA:   3'- ugUGCCuCCGGUAaCGAG-------------AGCCGGGu -5'
19764 3' -59.3 NC_004687.1 + 148231 0.69 0.560735
Target:  5'- gGCGacgaGGAcGGCCAggGCcaUUCGGCCCAc -3'
miRNA:   3'- -UGUg---CCU-CCGGUaaCGa-GAGCCGGGU- -5'
19764 3' -59.3 NC_004687.1 + 129987 0.7 0.541029
Target:  5'- -gACGGAGGCCGaagGCUCgUCGGUuaUCAa -3'
miRNA:   3'- ugUGCCUCCGGUaa-CGAG-AGCCG--GGU- -5'
19764 3' -59.3 NC_004687.1 + 75477 0.7 0.502369
Target:  5'- --gUGGAGGCCGggGCgcCUgGGCCCGc -3'
miRNA:   3'- uguGCCUCCGGUaaCGa-GAgCCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.