miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19764 5' -58 NC_004687.1 + 105125 0.66 0.865582
Target:  5'- aGUCGGCUuCCAcgucgaauGCUGGUGCcaGCacgUCGa -3'
miRNA:   3'- cCAGCCGGuGGU--------UGACCGCG--CGa--AGC- -5'
19764 5' -58 NC_004687.1 + 116160 0.66 0.865582
Target:  5'- --gCGGUU-CCGGCUGGCGgGCUUg- -3'
miRNA:   3'- ccaGCCGGuGGUUGACCGCgCGAAgc -5'
19764 5' -58 NC_004687.1 + 10543 0.66 0.865582
Target:  5'- cGUCGGCCAgCAACacagcGGCcaugccgcccaGCGCggCGa -3'
miRNA:   3'- cCAGCCGGUgGUUGa----CCG-----------CGCGaaGC- -5'
19764 5' -58 NC_004687.1 + 137006 0.66 0.865582
Target:  5'- -cUUGGCCACCGGCgccaGCGCGUc--- -3'
miRNA:   3'- ccAGCCGGUGGUUGac--CGCGCGaagc -5'
19764 5' -58 NC_004687.1 + 60942 0.66 0.865582
Target:  5'- cGGcgUGGCC-CCGACggccaGCGCGCcgUUCGa -3'
miRNA:   3'- -CCa-GCCGGuGGUUGac---CGCGCG--AAGC- -5'
19764 5' -58 NC_004687.1 + 57488 0.66 0.865582
Target:  5'- -uUCGGUCAUgccgCGACcgGGCGCaGCUUUGa -3'
miRNA:   3'- ccAGCCGGUG----GUUGa-CCGCG-CGAAGC- -5'
19764 5' -58 NC_004687.1 + 138017 0.66 0.865582
Target:  5'- aGGUCGGCCagcuccagaacGCCGACaccaccgagaaGGCGCaGCgcaUCGc -3'
miRNA:   3'- -CCAGCCGG-----------UGGUUGa----------CCGCG-CGa--AGC- -5'
19764 5' -58 NC_004687.1 + 54252 0.66 0.865582
Target:  5'- --aCGGCCuCCAccgcACUGGCGgGCa--- -3'
miRNA:   3'- ccaGCCGGuGGU----UGACCGCgCGaagc -5'
19764 5' -58 NC_004687.1 + 127681 0.66 0.864846
Target:  5'- gGGUCGGUguCGCCGAgcucgauCUGGCGcCGCc--- -3'
miRNA:   3'- -CCAGCCG--GUGGUU-------GACCGC-GCGaagc -5'
19764 5' -58 NC_004687.1 + 9834 0.66 0.861137
Target:  5'- --cCGGCUGCCAgcGguagagauccucgacCUGGCGCGCggucUCGg -3'
miRNA:   3'- ccaGCCGGUGGU--U---------------GACCGCGCGa---AGC- -5'
19764 5' -58 NC_004687.1 + 14480 0.66 0.858134
Target:  5'- cGUCGGCCAgcCCGAggccGCGCGCgaCGa -3'
miRNA:   3'- cCAGCCGGU--GGUUgac-CGCGCGaaGC- -5'
19764 5' -58 NC_004687.1 + 131847 0.66 0.858134
Target:  5'- aGcCGGUCGCCcGCUcGGCGUGCcggUUGa -3'
miRNA:   3'- cCaGCCGGUGGuUGA-CCGCGCGa--AGC- -5'
19764 5' -58 NC_004687.1 + 116986 0.66 0.858134
Target:  5'- gGGUgGGCgugCAcCCGGCgGGCGUGCUggUCa -3'
miRNA:   3'- -CCAgCCG---GU-GGUUGaCCGCGCGA--AGc -5'
19764 5' -58 NC_004687.1 + 22028 0.66 0.858134
Target:  5'- cGUCcgGGCCugCAGCucUGGCGC-CUgagCGa -3'
miRNA:   3'- cCAG--CCGGugGUUG--ACCGCGcGAa--GC- -5'
19764 5' -58 NC_004687.1 + 127143 0.66 0.858134
Target:  5'- ----cGCCgACCAGCUGGCgGCGCagcUCGa -3'
miRNA:   3'- ccagcCGG-UGGUUGACCG-CGCGa--AGC- -5'
19764 5' -58 NC_004687.1 + 71584 0.66 0.858134
Target:  5'- aGUCGGCggucugcacCACCGAC-GGCGUGgggUCGg -3'
miRNA:   3'- cCAGCCG---------GUGGUUGaCCGCGCga-AGC- -5'
19764 5' -58 NC_004687.1 + 29391 0.66 0.858134
Target:  5'- --cUGGCCG--AGCUGGCGCGCg--- -3'
miRNA:   3'- ccaGCCGGUggUUGACCGCGCGaagc -5'
19764 5' -58 NC_004687.1 + 92657 0.66 0.857379
Target:  5'- cGGUCGccuacaccgacGCCACCGcGCUGGUacucgacgcggucGCGCUgacCGg -3'
miRNA:   3'- -CCAGC-----------CGGUGGU-UGACCG-------------CGCGAa--GC- -5'
19764 5' -58 NC_004687.1 + 47995 0.66 0.857379
Target:  5'- cGGagCGGCCACCAagugucacuacuGCUcgggugaugccgaGGUGgGCUUCu -3'
miRNA:   3'- -CCa-GCCGGUGGU------------UGA-------------CCGCgCGAAGc -5'
19764 5' -58 NC_004687.1 + 112560 0.66 0.850491
Target:  5'- cGGaCaGCCACUgguccaGGCUGGCGCcCUUCu -3'
miRNA:   3'- -CCaGcCGGUGG------UUGACCGCGcGAAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.