miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19765 5' -56.8 NC_004687.1 + 125599 0.66 0.881655
Target:  5'- cUGcUCGCUGCggAUGGCgCCGauCUCGUCc -3'
miRNA:   3'- -ACuAGUGACGggUACCG-GGU--GAGCAG- -5'
19765 5' -56.8 NC_004687.1 + 119884 0.66 0.881655
Target:  5'- aGcUCGCcGCCCcgGGCC-GCUCGg- -3'
miRNA:   3'- aCuAGUGaCGGGuaCCGGgUGAGCag -5'
19765 5' -56.8 NC_004687.1 + 20036 0.66 0.881655
Target:  5'- cGAcCACcacGCCCG-GGCCCAgCUCGg- -3'
miRNA:   3'- aCUaGUGa--CGGGUaCCGGGU-GAGCag -5'
19765 5' -56.8 NC_004687.1 + 74765 0.66 0.877387
Target:  5'- cGAUCGCacgcugGCCCAgagucuggggguaacUgacgucguaGGCCgACUCGUCg -3'
miRNA:   3'- aCUAGUGa-----CGGGU---------------A---------CCGGgUGAGCAG- -5'
19765 5' -56.8 NC_004687.1 + 22721 0.66 0.874498
Target:  5'- cGAUCuGCUcGCCCugcUGGCCgCugUCGa- -3'
miRNA:   3'- aCUAG-UGA-CGGGu--ACCGG-GugAGCag -5'
19765 5' -56.8 NC_004687.1 + 54174 0.66 0.874498
Target:  5'- gUGAUCGCUGCuggggccacCCA-GGCCgCuGCUCGgUCg -3'
miRNA:   3'- -ACUAGUGACG---------GGUaCCGG-G-UGAGC-AG- -5'
19765 5' -56.8 NC_004687.1 + 134717 0.66 0.874498
Target:  5'- aGGUUugUGCCaugGGCuCCuagucuuuCUCGUCa -3'
miRNA:   3'- aCUAGugACGGguaCCG-GGu-------GAGCAG- -5'
19765 5' -56.8 NC_004687.1 + 10062 0.66 0.87377
Target:  5'- cGGUCGCccggucgGCaCCcugagcaAUGGCCCGCacuUCGUCu -3'
miRNA:   3'- aCUAGUGa------CG-GG-------UACCGGGUG---AGCAG- -5'
19765 5' -56.8 NC_004687.1 + 37656 0.66 0.87377
Target:  5'- cGAUCucggccacCUGCUCGuccaggcucaucuUGGCCCACUUGa- -3'
miRNA:   3'- aCUAGu-------GACGGGU-------------ACCGGGUGAGCag -5'
19765 5' -56.8 NC_004687.1 + 154940 0.66 0.867123
Target:  5'- gUGGUCGCggGCuCCuggGGCCCGa-CGUCc -3'
miRNA:   3'- -ACUAGUGa-CG-GGua-CCGGGUgaGCAG- -5'
19765 5' -56.8 NC_004687.1 + 86122 0.66 0.859535
Target:  5'- aGGUCACcGUCCAcGGUCCGCcCGg- -3'
miRNA:   3'- aCUAGUGaCGGGUaCCGGGUGaGCag -5'
19765 5' -56.8 NC_004687.1 + 38454 0.66 0.859535
Target:  5'- cUGcUCGC-GCCCGUGGCggCGCUCGa- -3'
miRNA:   3'- -ACuAGUGaCGGGUACCGg-GUGAGCag -5'
19765 5' -56.8 NC_004687.1 + 3651 0.66 0.859535
Target:  5'- gUGggCAUUGUggCCAUGGCCgCGaUCGUCc -3'
miRNA:   3'- -ACuaGUGACG--GGUACCGG-GUgAGCAG- -5'
19765 5' -56.8 NC_004687.1 + 114031 0.66 0.851742
Target:  5'- gGA-CAUgacaGCCCcggggGGCCCGgUCGUCg -3'
miRNA:   3'- aCUaGUGa---CGGGua---CCGGGUgAGCAG- -5'
19765 5' -56.8 NC_004687.1 + 44855 0.66 0.851742
Target:  5'- aGcUCGCcgggccggaUGCCCcgGGUgUGCUCGUCg -3'
miRNA:   3'- aCuAGUG---------ACGGGuaCCGgGUGAGCAG- -5'
19765 5' -56.8 NC_004687.1 + 126141 0.66 0.851742
Target:  5'- cGAUCAUcaGCCCGUcucauccucuucGGUCUGCUUGUCc -3'
miRNA:   3'- aCUAGUGa-CGGGUA------------CCGGGUGAGCAG- -5'
19765 5' -56.8 NC_004687.1 + 35940 0.66 0.850159
Target:  5'- uUGAUCACgccgGUCagaAUGGCCagccggacgauCUCGUCg -3'
miRNA:   3'- -ACUAGUGa---CGGg--UACCGGgu---------GAGCAG- -5'
19765 5' -56.8 NC_004687.1 + 9863 0.66 0.843748
Target:  5'- aUGAUCgucacugucguACUgGCCCugcUGGcCCUugUCGUCa -3'
miRNA:   3'- -ACUAG-----------UGA-CGGGu--ACC-GGGugAGCAG- -5'
19765 5' -56.8 NC_004687.1 + 4984 0.66 0.843748
Target:  5'- cUGAUCAgCggGCCCAccaGGCCCAggUUGUCa -3'
miRNA:   3'- -ACUAGU-Ga-CGGGUa--CCGGGUg-AGCAG- -5'
19765 5' -56.8 NC_004687.1 + 145345 0.66 0.843748
Target:  5'- cGGUCGCgGCCUucugcUGGUUgaGCUCGUCg -3'
miRNA:   3'- aCUAGUGaCGGGu----ACCGGg-UGAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.