miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19765 5' -56.8 NC_004687.1 + 1510 0.69 0.735036
Target:  5'- gGGUgAaaGCCC---GCCCACUCGUCg -3'
miRNA:   3'- aCUAgUgaCGGGuacCGGGUGAGCAG- -5'
19765 5' -56.8 NC_004687.1 + 1530 0.67 0.809913
Target:  5'- aUGAaccugCGuCUGgCCGUGGCCCAgUCGcCu -3'
miRNA:   3'- -ACUa----GU-GACgGGUACCGGGUgAGCaG- -5'
19765 5' -56.8 NC_004687.1 + 3651 0.66 0.859535
Target:  5'- gUGggCAUUGUggCCAUGGCCgCGaUCGUCc -3'
miRNA:   3'- -ACuaGUGACG--GGUACCGG-GUgAGCAG- -5'
19765 5' -56.8 NC_004687.1 + 4984 0.66 0.843748
Target:  5'- cUGAUCAgCggGCCCAccaGGCCCAggUUGUCa -3'
miRNA:   3'- -ACUAGU-Ga-CGGGUa--CCGGGUg-AGCAG- -5'
19765 5' -56.8 NC_004687.1 + 6462 0.67 0.827187
Target:  5'- cGAUCAuUUGCCCAgcgGGUCCAUgcuGUUg -3'
miRNA:   3'- aCUAGU-GACGGGUa--CCGGGUGag-CAG- -5'
19765 5' -56.8 NC_004687.1 + 9863 0.66 0.843748
Target:  5'- aUGAUCgucacugucguACUgGCCCugcUGGcCCUugUCGUCa -3'
miRNA:   3'- -ACUAG-----------UGA-CGGGu--ACC-GGGugAGCAG- -5'
19765 5' -56.8 NC_004687.1 + 10062 0.66 0.87377
Target:  5'- cGGUCGCccggucgGCaCCcugagcaAUGGCCCGCacuUCGUCu -3'
miRNA:   3'- aCUAGUGa------CG-GG-------UACCGGGUG---AGCAG- -5'
19765 5' -56.8 NC_004687.1 + 20036 0.66 0.881655
Target:  5'- cGAcCACcacGCCCG-GGCCCAgCUCGg- -3'
miRNA:   3'- aCUaGUGa--CGGGUaCCGGGU-GAGCag -5'
19765 5' -56.8 NC_004687.1 + 20738 0.67 0.818635
Target:  5'- cGGUCGC-GCCCGaGGCCgACgaCGUUg -3'
miRNA:   3'- aCUAGUGaCGGGUaCCGGgUGa-GCAG- -5'
19765 5' -56.8 NC_004687.1 + 20866 0.67 0.79199
Target:  5'- cGcgCGCcggGCCC-UGGCCCGCgUCGa- -3'
miRNA:   3'- aCuaGUGa--CGGGuACCGGGUG-AGCag -5'
19765 5' -56.8 NC_004687.1 + 22721 0.66 0.874498
Target:  5'- cGAUCuGCUcGCCCugcUGGCCgCugUCGa- -3'
miRNA:   3'- aCUAG-UGA-CGGGu--ACCGG-GugAGCag -5'
19765 5' -56.8 NC_004687.1 + 25098 0.69 0.685016
Target:  5'- cUGAUcCAC-GCCgGUGGCCC-CUgGUCc -3'
miRNA:   3'- -ACUA-GUGaCGGgUACCGGGuGAgCAG- -5'
19765 5' -56.8 NC_004687.1 + 28736 0.67 0.809913
Target:  5'- cUGGccgCGCUGCCCAcgcucaaGGCCaaccgggaagaACUCGUCg -3'
miRNA:   3'- -ACUa--GUGACGGGUa------CCGGg----------UGAGCAG- -5'
19765 5' -56.8 NC_004687.1 + 30187 0.7 0.623628
Target:  5'- gUGGUCGgUGCUCGacGCCCGC-CGUCa -3'
miRNA:   3'- -ACUAGUgACGGGUacCGGGUGaGCAG- -5'
19765 5' -56.8 NC_004687.1 + 31530 0.67 0.809913
Target:  5'- cGAUCugUGCCuCGgccUGGCCCucCUUGa- -3'
miRNA:   3'- aCUAGugACGG-GU---ACCGGGu-GAGCag -5'
19765 5' -56.8 NC_004687.1 + 35940 0.66 0.850159
Target:  5'- uUGAUCACgccgGUCagaAUGGCCagccggacgauCUCGUCg -3'
miRNA:   3'- -ACUAGUGa---CGGg--UACCGGgu---------GAGCAG- -5'
19765 5' -56.8 NC_004687.1 + 37656 0.66 0.87377
Target:  5'- cGAUCucggccacCUGCUCGuccaggcucaucuUGGCCCACUUGa- -3'
miRNA:   3'- aCUAGu-------GACGGGU-------------ACCGGGUGAGCag -5'
19765 5' -56.8 NC_004687.1 + 38454 0.66 0.859535
Target:  5'- cUGcUCGC-GCCCGUGGCggCGCUCGa- -3'
miRNA:   3'- -ACuAGUGaCGGGUACCGg-GUGAGCag -5'
19765 5' -56.8 NC_004687.1 + 39476 0.73 0.503
Target:  5'- cGAUCcuGCUGCCgGUGGCCCGCcccCGcCc -3'
miRNA:   3'- aCUAG--UGACGGgUACCGGGUGa--GCaG- -5'
19765 5' -56.8 NC_004687.1 + 42830 0.73 0.48378
Target:  5'- gGGUCGguugUUGCCCAUGGCucacaucuuCCACUCGaUCa -3'
miRNA:   3'- aCUAGU----GACGGGUACCG---------GGUGAGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.