miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19766 3' -54.2 NC_004687.1 + 102576 0.66 0.968549
Target:  5'- -aGGugGg--CGAUGGCgUCGCUGGCa -3'
miRNA:   3'- ugCCugUacaGCUGCUGaAGCGGCUG- -5'
19766 3' -54.2 NC_004687.1 + 118453 0.66 0.968549
Target:  5'- gAUGGACua--CGACGACUUCGagcCCGGu -3'
miRNA:   3'- -UGCCUGuacaGCUGCUGAAGC---GGCUg -5'
19766 3' -54.2 NC_004687.1 + 14987 0.66 0.968549
Target:  5'- uCGGGgucuUCGGCGACggccUUGCCGACg -3'
miRNA:   3'- uGCCUguacAGCUGCUGa---AGCGGCUG- -5'
19766 3' -54.2 NC_004687.1 + 63185 0.66 0.968549
Target:  5'- cGCGGAC-UGUaGACGACcgcgCGCCugGGCc -3'
miRNA:   3'- -UGCCUGuACAgCUGCUGaa--GCGG--CUG- -5'
19766 3' -54.2 NC_004687.1 + 140775 0.66 0.965413
Target:  5'- -aGGACcucgaccUCGACGACcucgaagUCGCCGAUc -3'
miRNA:   3'- ugCCUGuac----AGCUGCUGa------AGCGGCUG- -5'
19766 3' -54.2 NC_004687.1 + 109648 0.66 0.965413
Target:  5'- gGCGGGC-UGUU--CGACUgccCGCUGGCg -3'
miRNA:   3'- -UGCCUGuACAGcuGCUGAa--GCGGCUG- -5'
19766 3' -54.2 NC_004687.1 + 102557 0.66 0.962064
Target:  5'- -aGGAcCAUGUCGAUcaGACccUCGUCGAg -3'
miRNA:   3'- ugCCU-GUACAGCUG--CUGa-AGCGGCUg -5'
19766 3' -54.2 NC_004687.1 + 38867 0.66 0.962064
Target:  5'- cGCGGA--UGUCGGCGccaccCUUgCGCCGGg -3'
miRNA:   3'- -UGCCUguACAGCUGCu----GAA-GCGGCUg -5'
19766 3' -54.2 NC_004687.1 + 115748 0.66 0.962064
Target:  5'- gACGGcuGCAUGcUGACccggUCGCCGACu -3'
miRNA:   3'- -UGCC--UGUACaGCUGcugaAGCGGCUG- -5'
19766 3' -54.2 NC_004687.1 + 116845 0.66 0.962064
Target:  5'- -aGGGCAUGgaacugccCGAgGACgaggaccCGCCGACu -3'
miRNA:   3'- ugCCUGUACa-------GCUgCUGaa-----GCGGCUG- -5'
19766 3' -54.2 NC_004687.1 + 56570 0.66 0.962064
Target:  5'- cCGGAC-UGgggCGGCGGCga-GcCCGACg -3'
miRNA:   3'- uGCCUGuACa--GCUGCUGaagC-GGCUG- -5'
19766 3' -54.2 NC_004687.1 + 97327 0.66 0.962064
Target:  5'- gUGGAUcgccaagcGUCGAgcUGACUucuUCGCCGACa -3'
miRNA:   3'- uGCCUGua------CAGCU--GCUGA---AGCGGCUG- -5'
19766 3' -54.2 NC_004687.1 + 27578 0.66 0.958496
Target:  5'- cGCGG-CGg--CGGCGACUUucaCGUCGACc -3'
miRNA:   3'- -UGCCuGUacaGCUGCUGAA---GCGGCUG- -5'
19766 3' -54.2 NC_004687.1 + 44505 0.66 0.958496
Target:  5'- -aGGACAgcugGUCGAUGAgcacgaaguCggCGCCGAg -3'
miRNA:   3'- ugCCUGUa---CAGCUGCU---------GaaGCGGCUg -5'
19766 3' -54.2 NC_004687.1 + 116094 0.66 0.958496
Target:  5'- gGCGGAC-UGgauGAUGAa--CGCCGACg -3'
miRNA:   3'- -UGCCUGuACag-CUGCUgaaGCGGCUG- -5'
19766 3' -54.2 NC_004687.1 + 71985 0.66 0.958496
Target:  5'- -aGGGCGUccauuccaGUcCGGCGACcUCGCgGACu -3'
miRNA:   3'- ugCCUGUA--------CA-GCUGCUGaAGCGgCUG- -5'
19766 3' -54.2 NC_004687.1 + 73486 0.66 0.958496
Target:  5'- cGCGGACGg--CGaaGCGAUccCGCCGAUg -3'
miRNA:   3'- -UGCCUGUacaGC--UGCUGaaGCGGCUG- -5'
19766 3' -54.2 NC_004687.1 + 72335 0.66 0.958496
Target:  5'- uUGGugGUGuacUCGAacuccacgucaaCGAUgUCGCCGACg -3'
miRNA:   3'- uGCCugUAC---AGCU------------GCUGaAGCGGCUG- -5'
19766 3' -54.2 NC_004687.1 + 37429 0.66 0.958496
Target:  5'- cCGGGCc--UUGACGAgCUUgcCGCCGACg -3'
miRNA:   3'- uGCCUGuacAGCUGCU-GAA--GCGGCUG- -5'
19766 3' -54.2 NC_004687.1 + 64313 0.66 0.954704
Target:  5'- aGCGGACAU-UCGGCcagcuggaucaaGGCcagUGCCGACg -3'
miRNA:   3'- -UGCCUGUAcAGCUG------------CUGaa-GCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.