miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19766 5' -60.6 NC_004687.1 + 8589 0.66 0.772897
Target:  5'- gCCGCCGgacCGGGCaucacaCCGCCUggcaGUCc -3'
miRNA:   3'- -GGCGGCac-GCCCGga----GGUGGAa---CAGc -5'
19766 5' -60.6 NC_004687.1 + 104823 0.66 0.763877
Target:  5'- uCCGCCcaUGCGcugcuuGGCCUCgACaaUGUCGg -3'
miRNA:   3'- -GGCGGc-ACGC------CCGGAGgUGgaACAGC- -5'
19766 5' -60.6 NC_004687.1 + 85191 0.66 0.763877
Target:  5'- cUCGCCGUcGCGcuGGaCCUCCGCCggGccCGa -3'
miRNA:   3'- -GGCGGCA-CGC--CC-GGAGGUGGaaCa-GC- -5'
19766 5' -60.6 NC_004687.1 + 88062 0.66 0.754749
Target:  5'- gCGaCCGUGCGGGUCaaagaacgagUCCGgCUggugcggGUCGu -3'
miRNA:   3'- gGC-GGCACGCCCGG----------AGGUgGAa------CAGC- -5'
19766 5' -60.6 NC_004687.1 + 126493 0.66 0.745523
Target:  5'- aCGCCGcGCuGGCCacccaguaUCCGCCgggGUCc -3'
miRNA:   3'- gGCGGCaCGcCCGG--------AGGUGGaa-CAGc -5'
19766 5' -60.6 NC_004687.1 + 90420 0.66 0.739943
Target:  5'- -gGCCGUcGCGGGUguaggcggucagcaCUCCGCCgaccggcuuguccugGUCGg -3'
miRNA:   3'- ggCGGCA-CGCCCG--------------GAGGUGGaa-------------CAGC- -5'
19766 5' -60.6 NC_004687.1 + 135005 0.66 0.736205
Target:  5'- aCCGCCuccaGGGCCUCgaugcgCGCCUgcacGUCGg -3'
miRNA:   3'- -GGCGGcacgCCCGGAG------GUGGAa---CAGC- -5'
19766 5' -60.6 NC_004687.1 + 121363 0.66 0.726805
Target:  5'- cCCGCag-GCGGGCCgUCGCU--GUCGg -3'
miRNA:   3'- -GGCGgcaCGCCCGGaGGUGGaaCAGC- -5'
19766 5' -60.6 NC_004687.1 + 67067 0.66 0.726805
Target:  5'- gCCaGCUGcUGCaGGCCUUCGgCCUUGaUCGu -3'
miRNA:   3'- -GG-CGGC-ACGcCCGGAGGU-GGAAC-AGC- -5'
19766 5' -60.6 NC_004687.1 + 104780 0.66 0.71733
Target:  5'- cUCGUCGUGCGGcCCUgugcaucuUCGCCUuUGUCa -3'
miRNA:   3'- -GGCGGCACGCCcGGA--------GGUGGA-ACAGc -5'
19766 5' -60.6 NC_004687.1 + 27886 0.67 0.707788
Target:  5'- cCUGCCGauccUGCacaGGCgUCCACCcaUGUCGa -3'
miRNA:   3'- -GGCGGC----ACGc--CCGgAGGUGGa-ACAGC- -5'
19766 5' -60.6 NC_004687.1 + 85578 0.67 0.707788
Target:  5'- gCGCUGUGCGGcgacGCCggaGCCggGUCGu -3'
miRNA:   3'- gGCGGCACGCC----CGGaggUGGaaCAGC- -5'
19766 5' -60.6 NC_004687.1 + 121551 0.67 0.707788
Target:  5'- gUCGUCGUGCaGGCCguuggCCGCauagacGUCGa -3'
miRNA:   3'- -GGCGGCACGcCCGGa----GGUGgaa---CAGC- -5'
19766 5' -60.6 NC_004687.1 + 7341 0.67 0.707788
Target:  5'- uCUGCac--CGGGCCgaugUCCugCUUGUCGa -3'
miRNA:   3'- -GGCGgcacGCCCGG----AGGugGAACAGC- -5'
19766 5' -60.6 NC_004687.1 + 126947 0.67 0.688535
Target:  5'- -gGcCCGUGCGGGuCCaUCCAgCUcucGUCGa -3'
miRNA:   3'- ggC-GGCACGCCC-GG-AGGUgGAa--CAGC- -5'
19766 5' -60.6 NC_004687.1 + 107057 0.67 0.687568
Target:  5'- aCGCUGUGCGGuccggggucGCCgucgacgUCCAUCgUGUCGc -3'
miRNA:   3'- gGCGGCACGCC---------CGG-------AGGUGGaACAGC- -5'
19766 5' -60.6 NC_004687.1 + 141402 0.67 0.678841
Target:  5'- aUCaCCGUGCGGGCCggagacgagaCCACCggcgagaucGUCGc -3'
miRNA:   3'- -GGcGGCACGCCCGGa---------GGUGGaa-------CAGC- -5'
19766 5' -60.6 NC_004687.1 + 82154 0.67 0.678841
Target:  5'- gCCGCCGUcgaguagccGcCGGGCCcgcugCCGCCg-GUCa -3'
miRNA:   3'- -GGCGGCA---------C-GCCCGGa----GGUGGaaCAGc -5'
19766 5' -60.6 NC_004687.1 + 119765 0.67 0.678841
Target:  5'- gCCGCCuUGCGguuGGCCucgauggucuucUCCAgUUUGUCGa -3'
miRNA:   3'- -GGCGGcACGC---CCGG------------AGGUgGAACAGC- -5'
19766 5' -60.6 NC_004687.1 + 108112 0.67 0.678841
Target:  5'- gCGCCGUugGCGaaGGCgUCCugcaugGCCUUGUCc -3'
miRNA:   3'- gGCGGCA--CGC--CCGgAGG------UGGAACAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.