miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19766 5' -60.6 NC_004687.1 + 11599 0.67 0.678841
Target:  5'- -aGCCGgucauagaucUGcCGGGCCUCgGCCauacguUUGUCGu -3'
miRNA:   3'- ggCGGC----------AC-GCCCGGAGgUGG------AACAGC- -5'
19766 5' -60.6 NC_004687.1 + 141402 0.67 0.678841
Target:  5'- aUCaCCGUGCGGGCCggagacgagaCCACCggcgagaucGUCGc -3'
miRNA:   3'- -GGcGGCACGCCCGGa---------GGUGGaa-------CAGC- -5'
19766 5' -60.6 NC_004687.1 + 109978 0.67 0.669112
Target:  5'- gCCGCCGUGCGcGGgg-CCAgUggGUCGa -3'
miRNA:   3'- -GGCGGCACGC-CCggaGGUgGaaCAGC- -5'
19766 5' -60.6 NC_004687.1 + 86276 0.67 0.669112
Target:  5'- gCCGCCG-GUGGGCUcgcCCACCagUGcCa -3'
miRNA:   3'- -GGCGGCaCGCCCGGa--GGUGGa-ACaGc -5'
19766 5' -60.6 NC_004687.1 + 81170 0.67 0.666187
Target:  5'- cCCGCCGUcgGCGgagagccgcuucauGGCUUCCAgCagGUCGg -3'
miRNA:   3'- -GGCGGCA--CGC--------------CCGGAGGUgGaaCAGC- -5'
19766 5' -60.6 NC_004687.1 + 67983 0.67 0.659355
Target:  5'- -aGCCGgucgacgGCGGGCCgaCCACCgaucacGUCu -3'
miRNA:   3'- ggCGGCa------CGCCCGGa-GGUGGaa----CAGc -5'
19766 5' -60.6 NC_004687.1 + 92882 0.68 0.649577
Target:  5'- uCCGCCGacucggugagcUGCGGGgcaaCCUcgaucugauugCCGuCCUUGUCGg -3'
miRNA:   3'- -GGCGGC-----------ACGCCC----GGA-----------GGU-GGAACAGC- -5'
19766 5' -60.6 NC_004687.1 + 101455 0.68 0.643705
Target:  5'- -gGUCGguauugaucacauaGCGGGCCUCCugCaUGUUGa -3'
miRNA:   3'- ggCGGCa-------------CGCCCGGAGGugGaACAGC- -5'
19766 5' -60.6 NC_004687.1 + 44446 0.68 0.639788
Target:  5'- uUCGCCGUGCuucauccgcaGGGCCgagUCGCCggUGUa- -3'
miRNA:   3'- -GGCGGCACG----------CCCGGa--GGUGGa-ACAgc -5'
19766 5' -60.6 NC_004687.1 + 153150 0.68 0.639788
Target:  5'- gCGCgGUGCGgcaGGCCagCACCUgauugccccgacUGUCGa -3'
miRNA:   3'- gGCGgCACGC---CCGGagGUGGA------------ACAGC- -5'
19766 5' -60.6 NC_004687.1 + 153754 0.68 0.639788
Target:  5'- uCUGCgGUGgGGaccCCUCCACCcugGUCGu -3'
miRNA:   3'- -GGCGgCACgCCc--GGAGGUGGaa-CAGC- -5'
19766 5' -60.6 NC_004687.1 + 98119 0.68 0.629993
Target:  5'- uCCGCUcUGCGGGCCgUCACCagGaCGa -3'
miRNA:   3'- -GGCGGcACGCCCGGaGGUGGaaCaGC- -5'
19766 5' -60.6 NC_004687.1 + 123791 0.68 0.610413
Target:  5'- cCCGCCauccGacaGGGCCUCUACCgccgGUCc -3'
miRNA:   3'- -GGCGGca--Cg--CCCGGAGGUGGaa--CAGc -5'
19766 5' -60.6 NC_004687.1 + 2923 0.68 0.604549
Target:  5'- aCGCCGaUGUGggcgcgcaccugggaGGCCUUCACCcgGUCGu -3'
miRNA:   3'- gGCGGC-ACGC---------------CCGGAGGUGGaaCAGC- -5'
19766 5' -60.6 NC_004687.1 + 104449 0.68 0.600643
Target:  5'- gCCGCCGacaUGCuGGCCaagaCCACCagcagGUCGg -3'
miRNA:   3'- -GGCGGC---ACGcCCGGa---GGUGGaa---CAGC- -5'
19766 5' -60.6 NC_004687.1 + 74764 0.69 0.590894
Target:  5'- uCCGCCGacgGCgGGGCCUCguuCACCacucGUCa -3'
miRNA:   3'- -GGCGGCa--CG-CCCGGAG---GUGGaa--CAGc -5'
19766 5' -60.6 NC_004687.1 + 34430 0.7 0.52374
Target:  5'- -aGUCGaucuccaucaGCuGGCCUCCACCUUGUCc -3'
miRNA:   3'- ggCGGCa---------CGcCCGGAGGUGGAACAGc -5'
19766 5' -60.6 NC_004687.1 + 15005 0.7 0.52374
Target:  5'- -gGCCGUGCGGaGCUUCCACaccagcuUCGa -3'
miRNA:   3'- ggCGGCACGCC-CGGAGGUGgaac---AGC- -5'
19766 5' -60.6 NC_004687.1 + 134112 0.7 0.52374
Target:  5'- cUCGUCGUGCagccaGGCCUCCugCUgcugcgggGUCa -3'
miRNA:   3'- -GGCGGCACGc----CCGGAGGugGAa-------CAGc -5'
19766 5' -60.6 NC_004687.1 + 106475 0.7 0.514366
Target:  5'- aUGCCGauccUGCGGGCCaUCCugCa-GUCGu -3'
miRNA:   3'- gGCGGC----ACGCCCGG-AGGugGaaCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.