miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19767 3' -52.2 NC_004687.1 + 115983 1.11 0.005436
Target:  5'- aGCAACGCGGGGAGCGUUACCAAACUGu -3'
miRNA:   3'- -CGUUGCGCCCCUCGCAAUGGUUUGAC- -5'
19767 3' -52.2 NC_004687.1 + 29346 0.78 0.497811
Target:  5'- aCAACGCGGGGAGC--UACCGGuaccugugugcGCUGg -3'
miRNA:   3'- cGUUGCGCCCCUCGcaAUGGUU-----------UGAC- -5'
19767 3' -52.2 NC_004687.1 + 100676 0.76 0.619582
Target:  5'- uUAACuCGGGGAGgucggauCGUUACCGGACUGg -3'
miRNA:   3'- cGUUGcGCCCCUC-------GCAAUGGUUUGAC- -5'
19767 3' -52.2 NC_004687.1 + 111149 0.74 0.724295
Target:  5'- cGCAGC-CGGGGuGuUGUUGCCcGGCUGg -3'
miRNA:   3'- -CGUUGcGCCCCuC-GCAAUGGuUUGAC- -5'
19767 3' -52.2 NC_004687.1 + 14287 0.73 0.77361
Target:  5'- aGCGGCGCGGcuGGAGCcugauUUGuCCGAACUGc -3'
miRNA:   3'- -CGUUGCGCC--CCUCGc----AAU-GGUUUGAC- -5'
19767 3' -52.2 NC_004687.1 + 120683 0.72 0.83431
Target:  5'- aGCAuCGCGGGGAGaccUGCCAcauccagccccgcgAGCUGa -3'
miRNA:   3'- -CGUuGCGCCCCUCgcaAUGGU--------------UUGAC- -5'
19767 3' -52.2 NC_004687.1 + 6758 0.71 0.845167
Target:  5'- uGCGGCGCGGGGcuguGGCcGUcauccGCCGAACg- -3'
miRNA:   3'- -CGUUGCGCCCC----UCG-CAa----UGGUUUGac -5'
19767 3' -52.2 NC_004687.1 + 153720 0.71 0.861195
Target:  5'- gGCGACGCGGGcaaGGGCaccACCGugGACUGg -3'
miRNA:   3'- -CGUUGCGCCC---CUCGcaaUGGU--UUGAC- -5'
19767 3' -52.2 NC_004687.1 + 139384 0.71 0.876359
Target:  5'- aGCGGCGCGGGccuGGGCGaaggucacGCCGGACa- -3'
miRNA:   3'- -CGUUGCGCCC---CUCGCaa------UGGUUUGac -5'
19767 3' -52.2 NC_004687.1 + 110650 0.71 0.876359
Target:  5'- gGCGugGUGGacGGAGcCGgagugGCCGAGCUGc -3'
miRNA:   3'- -CGUugCGCC--CCUC-GCaa---UGGUUUGAC- -5'
19767 3' -52.2 NC_004687.1 + 148833 0.7 0.89061
Target:  5'- gGCcGCGCGuGaGGAGCGcaagGCCGAGCg- -3'
miRNA:   3'- -CGuUGCGC-C-CCUCGCaa--UGGUUUGac -5'
19767 3' -52.2 NC_004687.1 + 79282 0.7 0.90391
Target:  5'- uCGACGCGGuGAGCGgcgaGCgAAACUGc -3'
miRNA:   3'- cGUUGCGCCcCUCGCaa--UGgUUUGAC- -5'
19767 3' -52.2 NC_004687.1 + 127192 0.7 0.90391
Target:  5'- -gAGCGUGGGcAGCGcgGCCAGGCa- -3'
miRNA:   3'- cgUUGCGCCCcUCGCaaUGGUUUGac -5'
19767 3' -52.2 NC_004687.1 + 135858 0.7 0.90391
Target:  5'- aCAACGCGGugcgucugguGGAGCagu-CCGAGCUGg -3'
miRNA:   3'- cGUUGCGCC----------CCUCGcaauGGUUUGAC- -5'
19767 3' -52.2 NC_004687.1 + 45889 0.7 0.910195
Target:  5'- aGCAGCGUccGGGuGGGCGUUAgCCGcGCa- -3'
miRNA:   3'- -CGUUGCG--CCC-CUCGCAAU-GGUuUGac -5'
19767 3' -52.2 NC_004687.1 + 124264 0.7 0.910195
Target:  5'- uCGACcuGCGGGcGAGCcuggGCCAGGCUGu -3'
miRNA:   3'- cGUUG--CGCCC-CUCGcaa-UGGUUUGAC- -5'
19767 3' -52.2 NC_004687.1 + 39326 0.69 0.916232
Target:  5'- gGCGGuCGCGGGcGAgGCucagGCCGAACUGc -3'
miRNA:   3'- -CGUU-GCGCCC-CU-CGcaa-UGGUUUGAC- -5'
19767 3' -52.2 NC_004687.1 + 41926 0.69 0.916232
Target:  5'- cGCGACGUGGGuGAacaGCGaguagGCCAgcGACUGc -3'
miRNA:   3'- -CGUUGCGCCC-CU---CGCaa---UGGU--UUGAC- -5'
19767 3' -52.2 NC_004687.1 + 116977 0.69 0.921453
Target:  5'- uGguGCGCGGGGugGGCGUgcacCCGGcgggcguGCUGg -3'
miRNA:   3'- -CguUGCGCCCC--UCGCAau--GGUU-------UGAC- -5'
19767 3' -52.2 NC_004687.1 + 105731 0.69 0.932846
Target:  5'- cGCuAGCGCGGGcGAGCcGgaGCCGGAgUa -3'
miRNA:   3'- -CG-UUGCGCCC-CUCG-CaaUGGUUUgAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.