miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19767 3' -52.2 NC_004687.1 + 73972 0.66 0.982103
Target:  5'- gGCGGCGCGGuggccGGAGUGaccgGCCAGGg-- -3'
miRNA:   3'- -CGUUGCGCC-----CCUCGCaa--UGGUUUgac -5'
19767 3' -52.2 NC_004687.1 + 82305 0.67 0.965356
Target:  5'- uGCAACGCGGuucccagcuGGCGgucguccagggucggGCCAAGCUGg -3'
miRNA:   3'- -CGUUGCGCCcc-------UCGCaa-------------UGGUUUGAC- -5'
19767 3' -52.2 NC_004687.1 + 63691 0.67 0.966341
Target:  5'- -gGGCgGCGGGGAGCGUcGCU--GCa- -3'
miRNA:   3'- cgUUG-CGCCCCUCGCAaUGGuuUGac -5'
19767 3' -52.2 NC_004687.1 + 83182 0.67 0.972406
Target:  5'- -gAGCGCGucGAGCGUgACCAAcCUGc -3'
miRNA:   3'- cgUUGCGCccCUCGCAaUGGUUuGAC- -5'
19767 3' -52.2 NC_004687.1 + 93610 0.67 0.975124
Target:  5'- cGCAAuCGUGucGAGCGUccgGCCAAACg- -3'
miRNA:   3'- -CGUU-GCGCccCUCGCAa--UGGUUUGac -5'
19767 3' -52.2 NC_004687.1 + 129975 0.67 0.975124
Target:  5'- -gAACGCgGGGGAGaCGgagGCCGAagGCUc -3'
miRNA:   3'- cgUUGCG-CCCCUC-GCaa-UGGUU--UGAc -5'
19767 3' -52.2 NC_004687.1 + 142173 0.67 0.975124
Target:  5'- uCAACGUGGGcagccuGAGCGUgcgcACCGGGCc- -3'
miRNA:   3'- cGUUGCGCCC------CUCGCAa---UGGUUUGac -5'
19767 3' -52.2 NC_004687.1 + 8410 0.67 0.97764
Target:  5'- gGCGcGCGCGGauGGAGCGcgagGCCGcuCUGc -3'
miRNA:   3'- -CGU-UGCGCC--CCUCGCaa--UGGUuuGAC- -5'
19767 3' -52.2 NC_004687.1 + 20592 0.67 0.97764
Target:  5'- cCAACgGCGGGucgcugcgcGAGCG-UGCCAcccGGCUGg -3'
miRNA:   3'- cGUUG-CGCCC---------CUCGCaAUGGU---UUGAC- -5'
19767 3' -52.2 NC_004687.1 + 23323 0.68 0.951514
Target:  5'- aGgAGCGCaGGGAggcccuGCGg-GCCAAGCUGg -3'
miRNA:   3'- -CgUUGCGcCCCU------CGCaaUGGUUUGAC- -5'
19767 3' -52.2 NC_004687.1 + 105731 0.69 0.932846
Target:  5'- cGCuAGCGCGGGcGAGCcGgaGCCGGAgUa -3'
miRNA:   3'- -CG-UUGCGCCC-CUCG-CaaUGGUUUgAc -5'
19767 3' -52.2 NC_004687.1 + 116977 0.69 0.921453
Target:  5'- uGguGCGCGGGGugGGCGUgcacCCGGcgggcguGCUGg -3'
miRNA:   3'- -CguUGCGCCCC--UCGCAau--GGUU-------UGAC- -5'
19767 3' -52.2 NC_004687.1 + 100676 0.76 0.619582
Target:  5'- uUAACuCGGGGAGgucggauCGUUACCGGACUGg -3'
miRNA:   3'- cGUUGcGCCCCUC-------GCAAUGGUUUGAC- -5'
19767 3' -52.2 NC_004687.1 + 14287 0.73 0.77361
Target:  5'- aGCGGCGCGGcuGGAGCcugauUUGuCCGAACUGc -3'
miRNA:   3'- -CGUUGCGCC--CCUCGc----AAU-GGUUUGAC- -5'
19767 3' -52.2 NC_004687.1 + 120683 0.72 0.83431
Target:  5'- aGCAuCGCGGGGAGaccUGCCAcauccagccccgcgAGCUGa -3'
miRNA:   3'- -CGUuGCGCCCCUCgcaAUGGU--------------UUGAC- -5'
19767 3' -52.2 NC_004687.1 + 153720 0.71 0.861195
Target:  5'- gGCGACGCGGGcaaGGGCaccACCGugGACUGg -3'
miRNA:   3'- -CGUUGCGCCC---CUCGcaaUGGU--UUGAC- -5'
19767 3' -52.2 NC_004687.1 + 148833 0.7 0.89061
Target:  5'- gGCcGCGCGuGaGGAGCGcaagGCCGAGCg- -3'
miRNA:   3'- -CGuUGCGC-C-CCUCGCaa--UGGUUUGac -5'
19767 3' -52.2 NC_004687.1 + 135858 0.7 0.90391
Target:  5'- aCAACGCGGugcgucugguGGAGCagu-CCGAGCUGg -3'
miRNA:   3'- cGUUGCGCC----------CCUCGcaauGGUUUGAC- -5'
19767 3' -52.2 NC_004687.1 + 45889 0.7 0.910195
Target:  5'- aGCAGCGUccGGGuGGGCGUUAgCCGcGCa- -3'
miRNA:   3'- -CGUUGCG--CCC-CUCGCAAU-GGUuUGac -5'
19767 3' -52.2 NC_004687.1 + 39326 0.69 0.916232
Target:  5'- gGCGGuCGCGGGcGAgGCucagGCCGAACUGc -3'
miRNA:   3'- -CGUU-GCGCCC-CU-CGcaa-UGGUUUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.