miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19767 5' -57.1 NC_004687.1 + 66691 0.66 0.903433
Target:  5'- uCCUGGUcGGCGGCGGCaucuauuccggcggCGCGCgGGg -3'
miRNA:   3'- -GGGUCAaCCGUUGCUGga------------GCGCGgCU- -5'
19767 5' -57.1 NC_004687.1 + 20303 0.66 0.902815
Target:  5'- cCCCAGaaGGCGAacagagccuuguCGuCCUCGCGCaGGu -3'
miRNA:   3'- -GGGUCaaCCGUU------------GCuGGAGCGCGgCU- -5'
19767 5' -57.1 NC_004687.1 + 135321 0.66 0.902815
Target:  5'- gCCGGgUGGCAcgcucgcgcaGCGACC-CGCcguugggcuugGCCGGa -3'
miRNA:   3'- gGGUCaACCGU----------UGCUGGaGCG-----------CGGCU- -5'
19767 5' -57.1 NC_004687.1 + 64541 0.66 0.902815
Target:  5'- aCCUGGUggaagGGCu-CGACCg-GCGCCa- -3'
miRNA:   3'- -GGGUCAa----CCGuuGCUGGagCGCGGcu -5'
19767 5' -57.1 NC_004687.1 + 43794 0.66 0.902815
Target:  5'- gCgAGUggGGCaaGugGGCCUUccaGCGCCGGa -3'
miRNA:   3'- gGgUCAa-CCG--UugCUGGAG---CGCGGCU- -5'
19767 5' -57.1 NC_004687.1 + 134919 0.66 0.902815
Target:  5'- gCCC---UGGCcauUGGCCUCGaCGCCGu -3'
miRNA:   3'- -GGGucaACCGuu-GCUGGAGC-GCGGCu -5'
19767 5' -57.1 NC_004687.1 + 80973 0.66 0.902815
Target:  5'- aCCCAG--GGCAACGAUCcccggcugUCGaacacccgcaCGCCGAc -3'
miRNA:   3'- -GGGUCaaCCGUUGCUGG--------AGC----------GCGGCU- -5'
19767 5' -57.1 NC_004687.1 + 66740 0.66 0.90095
Target:  5'- gCCCgcaaugaaggucgaGGUcaucGGC-ACGACCUCGCGCa-- -3'
miRNA:   3'- -GGG--------------UCAa---CCGuUGCUGGAGCGCGgcu -5'
19767 5' -57.1 NC_004687.1 + 106805 0.66 0.89652
Target:  5'- aCCCAcGgcucUGGCAA-GACCUacauCGCCGAg -3'
miRNA:   3'- -GGGU-Ca---ACCGUUgCUGGAgc--GCGGCU- -5'
19767 5' -57.1 NC_004687.1 + 56568 0.66 0.89652
Target:  5'- aCCCGGacuggGGCGGCGgcgaGCC-CGaCGUCGAa -3'
miRNA:   3'- -GGGUCaa---CCGUUGC----UGGaGC-GCGGCU- -5'
19767 5' -57.1 NC_004687.1 + 15970 0.66 0.89652
Target:  5'- aCCCAGUUGcCGAaGACgCUCGgGUCGu -3'
miRNA:   3'- -GGGUCAACcGUUgCUG-GAGCgCGGCu -5'
19767 5' -57.1 NC_004687.1 + 79089 0.66 0.89652
Target:  5'- uUCAGc-GGCGGCGGCgCg-GCGCCGGg -3'
miRNA:   3'- gGGUCaaCCGUUGCUG-GagCGCGGCU- -5'
19767 5' -57.1 NC_004687.1 + 131479 0.66 0.89652
Target:  5'- aCCGGgcgaagGGCu-UGACCUCgaagGCGCCGu -3'
miRNA:   3'- gGGUCaa----CCGuuGCUGGAG----CGCGGCu -5'
19767 5' -57.1 NC_004687.1 + 63180 0.66 0.89652
Target:  5'- gCCAGcgcGGacuguaGACGACCgCGCGCCu- -3'
miRNA:   3'- gGGUCaa-CCg-----UUGCUGGaGCGCGGcu -5'
19767 5' -57.1 NC_004687.1 + 87690 0.66 0.89652
Target:  5'- aCCCGGUUGaGUu-CGACCggaGCcCCGAc -3'
miRNA:   3'- -GGGUCAAC-CGuuGCUGGag-CGcGGCU- -5'
19767 5' -57.1 NC_004687.1 + 44091 0.66 0.89652
Target:  5'- gCCCAGgcGGUcgcguCGACCUCggaGCGCUu- -3'
miRNA:   3'- -GGGUCaaCCGuu---GCUGGAG---CGCGGcu -5'
19767 5' -57.1 NC_004687.1 + 139516 0.66 0.89652
Target:  5'- gCgCAGaugggUGGUGGCGACCUucuUGCGCCc- -3'
miRNA:   3'- -GgGUCa----ACCGUUGCUGGA---GCGCGGcu -5'
19767 5' -57.1 NC_004687.1 + 2797 0.66 0.894588
Target:  5'- gCCCGGc-GGCGACGGCuacgccuuugucuaCUaCGCGcCCGAc -3'
miRNA:   3'- -GGGUCaaCCGUUGCUG--------------GA-GCGC-GGCU- -5'
19767 5' -57.1 NC_004687.1 + 111392 0.66 0.893939
Target:  5'- aCCCAGgcccgucagcucGGCGcCGACUUCGUGCUc- -3'
miRNA:   3'- -GGGUCaa----------CCGUuGCUGGAGCGCGGcu -5'
19767 5' -57.1 NC_004687.1 + 19787 0.66 0.892636
Target:  5'- uCCCAGUaGGUcugacugugggugacGAUGACC-C-CGCCGAc -3'
miRNA:   3'- -GGGUCAaCCG---------------UUGCUGGaGcGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.