miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19768 3' -55.1 NC_004687.1 + 40406 0.66 0.955592
Target:  5'- gGGUUAU--CCcCGGUCUCGaGCCcuGGAg -3'
miRNA:   3'- -CCAAUGuuGGaGCCAGAGCgCGG--CCU- -5'
19768 3' -55.1 NC_004687.1 + 134038 0.66 0.951665
Target:  5'- uGGUgGCGguacAUCUUGGccagcaUCUCGCGCUGGc -3'
miRNA:   3'- -CCAaUGU----UGGAGCC------AGAGCGCGGCCu -5'
19768 3' -55.1 NC_004687.1 + 56261 0.66 0.951665
Target:  5'- aGGUUucgAACCUCGGUCcuccugCGUGUCGa- -3'
miRNA:   3'- -CCAAug-UUGGAGCCAGa-----GCGCGGCcu -5'
19768 3' -55.1 NC_004687.1 + 39755 0.66 0.947513
Target:  5'- gGGUgGCAACCUCaagCcCGCcaGCCGGAa -3'
miRNA:   3'- -CCAaUGUUGGAGccaGaGCG--CGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 135298 0.66 0.947513
Target:  5'- cGUcGCGGuCCgUCGGg-UCGCGCUGGAu -3'
miRNA:   3'- cCAaUGUU-GG-AGCCagAGCGCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 109520 0.66 0.947513
Target:  5'- ---gGCAugCUUcagCUUGCGCCGGAu -3'
miRNA:   3'- ccaaUGUugGAGccaGAGCGCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 131035 0.66 0.947085
Target:  5'- uGGUUGCAGCCUUgaGGUgcugcucgcccagCUCGUGggcCCGGu -3'
miRNA:   3'- -CCAAUGUUGGAG--CCA-------------GAGCGC---GGCCu -5'
19768 3' -55.1 NC_004687.1 + 85935 0.66 0.943131
Target:  5'- uGGgaucCAACgUCGGaCgCGCGCCGGu -3'
miRNA:   3'- -CCaau-GUUGgAGCCaGaGCGCGGCCu -5'
19768 3' -55.1 NC_004687.1 + 85089 0.66 0.943131
Target:  5'- cGGcugGCAGCCcaacuUCGGcCaCGCGCUGGGc -3'
miRNA:   3'- -CCaa-UGUUGG-----AGCCaGaGCGCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 117130 0.66 0.93367
Target:  5'- gGGUgACGAaCUcaCGGUUgagCGCGCUGGAg -3'
miRNA:   3'- -CCAaUGUUgGA--GCCAGa--GCGCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 21917 0.66 0.93367
Target:  5'- --cUACGGCCcgcgUGG-UUCGCGCUGGGg -3'
miRNA:   3'- ccaAUGUUGGa---GCCaGAGCGCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 46067 0.67 0.928589
Target:  5'- aGGUcggGCAcCaCUCGGUggCGgGCCGGGa -3'
miRNA:   3'- -CCAa--UGUuG-GAGCCAgaGCgCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 150094 0.67 0.928589
Target:  5'- --aUGCGGCCUCGGagUUCGUcCCGGc -3'
miRNA:   3'- ccaAUGUUGGAGCCa-GAGCGcGGCCu -5'
19768 3' -55.1 NC_004687.1 + 39643 0.67 0.928589
Target:  5'- ---aGCccuCCUCGaUCgCGCGCCGGAa -3'
miRNA:   3'- ccaaUGuu-GGAGCcAGaGCGCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 57342 0.67 0.928589
Target:  5'- uGUUGCAGCUgacgGGUCUCGgGCUuGAg -3'
miRNA:   3'- cCAAUGUUGGag--CCAGAGCgCGGcCU- -5'
19768 3' -55.1 NC_004687.1 + 150051 0.67 0.928589
Target:  5'- ---cAgGGCCUUGGUCaUCGgCGcCCGGAc -3'
miRNA:   3'- ccaaUgUUGGAGCCAG-AGC-GC-GGCCU- -5'
19768 3' -55.1 NC_004687.1 + 72695 0.67 0.928589
Target:  5'- ---cGCAACUcggcaUCGGUCUCGgcgucgaugcCGCCGGu -3'
miRNA:   3'- ccaaUGUUGG-----AGCCAGAGC----------GCGGCCu -5'
19768 3' -55.1 NC_004687.1 + 44563 0.67 0.923272
Target:  5'- cGUcuUGACCgugCGGUCgcCGCGCUGGGg -3'
miRNA:   3'- cCAauGUUGGa--GCCAGa-GCGCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 124669 0.67 0.923272
Target:  5'- uGGUUGC--CCUCGGUCagCaCGCCGuGGg -3'
miRNA:   3'- -CCAAUGuuGGAGCCAGa-GcGCGGC-CU- -5'
19768 3' -55.1 NC_004687.1 + 31710 0.67 0.923272
Target:  5'- ---gACGACCU-GGUCUCugGCGCCGc- -3'
miRNA:   3'- ccaaUGUUGGAgCCAGAG--CGCGGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.