miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19768 3' -55.1 NC_004687.1 + 85089 0.66 0.943131
Target:  5'- cGGcugGCAGCCcaacuUCGGcCaCGCGCUGGGc -3'
miRNA:   3'- -CCaa-UGUUGG-----AGCCaGaGCGCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 134525 0.68 0.893191
Target:  5'- aGUUACcgcauucaucGCUUCGGUCUgaCGCCGGAg -3'
miRNA:   3'- cCAAUGu---------UGGAGCCAGAgcGCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 135523 0.68 0.893191
Target:  5'- --cUGCAACCcggCGGUCUgGgCGCCGa- -3'
miRNA:   3'- ccaAUGUUGGa--GCCAGAgC-GCGGCcu -5'
19768 3' -55.1 NC_004687.1 + 28395 0.67 0.905917
Target:  5'- ---gACGACgUCGcGaUCUCguGCGCCGGAg -3'
miRNA:   3'- ccaaUGUUGgAGC-C-AGAG--CGCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 107779 0.67 0.917721
Target:  5'- gGGUgccUAC-GCCgagggCGGUCgCGaCGCCGGGg -3'
miRNA:   3'- -CCA---AUGuUGGa----GCCAGaGC-GCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 31710 0.67 0.923272
Target:  5'- ---gACGACCU-GGUCUCugGCGCCGc- -3'
miRNA:   3'- ccaaUGUUGGAgCCAGAG--CGCGGCcu -5'
19768 3' -55.1 NC_004687.1 + 150094 0.67 0.928589
Target:  5'- --aUGCGGCCUCGGagUUCGUcCCGGc -3'
miRNA:   3'- ccaAUGUUGGAGCCa-GAGCGcGGCCu -5'
19768 3' -55.1 NC_004687.1 + 21917 0.66 0.93367
Target:  5'- --cUACGGCCcgcgUGG-UUCGCGCUGGGg -3'
miRNA:   3'- ccaAUGUUGGa---GCCaGAGCGCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 85935 0.66 0.943131
Target:  5'- uGGgaucCAACgUCGGaCgCGCGCCGGu -3'
miRNA:   3'- -CCaau-GUUGgAGCCaGaGCGCGGCCu -5'
19768 3' -55.1 NC_004687.1 + 107958 0.68 0.88649
Target:  5'- ----cCGGCUUCGGUCggcUGgGCCGGAu -3'
miRNA:   3'- ccaauGUUGGAGCCAGa--GCgCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 133188 0.68 0.879567
Target:  5'- ---cGCAAUCUCgaauGGuUCUgGCGCCGGGu -3'
miRNA:   3'- ccaaUGUUGGAG----CC-AGAgCGCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 101281 0.68 0.865077
Target:  5'- gGGUgcccUGCAccGCCUCGGcgagCUgGCGCCGu- -3'
miRNA:   3'- -CCA----AUGU--UGGAGCCa---GAgCGCGGCcu -5'
19768 3' -55.1 NC_004687.1 + 85347 0.72 0.684539
Target:  5'- cGGUcgugGCGACCuacaccgcgcUCGGUaUCGCGCUGGGc -3'
miRNA:   3'- -CCAa---UGUUGG----------AGCCAgAGCGCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 76927 0.72 0.694556
Target:  5'- cGGU---GACCuUCGGUgUCGCGCUGGu -3'
miRNA:   3'- -CCAaugUUGG-AGCCAgAGCGCGGCCu -5'
19768 3' -55.1 NC_004687.1 + 74259 0.71 0.743692
Target:  5'- cGGcgGCAAUaaccugCUCGGUCUgGCGUCGGc -3'
miRNA:   3'- -CCaaUGUUG------GAGCCAGAgCGCGGCCu -5'
19768 3' -55.1 NC_004687.1 + 154490 0.7 0.790431
Target:  5'- ---aGCAGCC-CGGUCucaggUCGCGCCGa- -3'
miRNA:   3'- ccaaUGUUGGaGCCAG-----AGCGCGGCcu -5'
19768 3' -55.1 NC_004687.1 + 51043 0.7 0.799393
Target:  5'- cGGUaGCGGCCUCGGUCgcuuCGCCa-- -3'
miRNA:   3'- -CCAaUGUUGGAGCCAGagc-GCGGccu -5'
19768 3' -55.1 NC_004687.1 + 131248 0.7 0.808206
Target:  5'- uGGgcucGCGAgUCUCGGgccugccgaUCUCGUGCCGGGa -3'
miRNA:   3'- -CCaa--UGUU-GGAGCC---------AGAGCGCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 149758 0.69 0.855985
Target:  5'- cGGU--CGGCCagcucuucgaugCGGUCUggUGCGCCGGAc -3'
miRNA:   3'- -CCAauGUUGGa-----------GCCAGA--GCGCGGCCU- -5'
19768 3' -55.1 NC_004687.1 + 48603 0.69 0.85752
Target:  5'- aGGccUACAcCCUCGGUC-CGCGCagCGGc -3'
miRNA:   3'- -CCa-AUGUuGGAGCCAGaGCGCG--GCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.