miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19769 3' -55.6 NC_004687.1 + 31138 0.66 0.923607
Target:  5'- gGUUGUAGacgaCACCCUGACgUGgagcGGCa -3'
miRNA:   3'- -CAACAUCgag-GUGGGGCUGgACa---CUG- -5'
19769 3' -55.6 NC_004687.1 + 23876 0.66 0.905979
Target:  5'- --cGUGGUaaggACCCCG-CCUGUGGCu -3'
miRNA:   3'- caaCAUCGagg-UGGGGCuGGACACUG- -5'
19769 3' -55.6 NC_004687.1 + 67807 0.66 0.899623
Target:  5'- -----uGCUcggCCACCCUGACCUGgaGACc -3'
miRNA:   3'- caacauCGA---GGUGGGGCUGGACa-CUG- -5'
19769 3' -55.6 NC_004687.1 + 138706 0.66 0.898324
Target:  5'- --aGUAGCUgaagacggucugCCACCCCGuaucauggucauCCUcGUGGCg -3'
miRNA:   3'- caaCAUCGA------------GGUGGGGCu-----------GGA-CACUG- -5'
19769 3' -55.6 NC_004687.1 + 133714 0.67 0.871878
Target:  5'- ---cUGGC-CCaccaugugGCCCCGACCUGgGACu -3'
miRNA:   3'- caacAUCGaGG--------UGGGGCUGGACaCUG- -5'
19769 3' -55.6 NC_004687.1 + 151021 0.67 0.871878
Target:  5'- ----cGGcCUCCAgCCCGACCUcgGUGAg -3'
miRNA:   3'- caacaUC-GAGGUgGGGCUGGA--CACUg -5'
19769 3' -55.6 NC_004687.1 + 102534 0.67 0.84876
Target:  5'- -aUGgccAGCUCCugCUgGGCCUGgaucuUGACg -3'
miRNA:   3'- caACa--UCGAGGugGGgCUGGAC-----ACUG- -5'
19769 3' -55.6 NC_004687.1 + 113846 0.68 0.832339
Target:  5'- ----cAGCUCCGucgggUCCUGGCCgGUGACg -3'
miRNA:   3'- caacaUCGAGGU-----GGGGCUGGaCACUG- -5'
19769 3' -55.6 NC_004687.1 + 136081 0.68 0.806338
Target:  5'- --cGgcGCgguggCCACCCCGAUCUG-GAa -3'
miRNA:   3'- caaCauCGa----GGUGGGGCUGGACaCUg -5'
19769 3' -55.6 NC_004687.1 + 137753 0.68 0.806338
Target:  5'- --cGUAGCUCagcgaGCCCCGGCCcacaccGGCa -3'
miRNA:   3'- caaCAUCGAGg----UGGGGCUGGaca---CUG- -5'
19769 3' -55.6 NC_004687.1 + 154668 0.69 0.797339
Target:  5'- -aUGUAGCgCCACUCCGGCUgcucGGCa -3'
miRNA:   3'- caACAUCGaGGUGGGGCUGGaca-CUG- -5'
19769 3' -55.6 NC_004687.1 + 92372 0.69 0.778894
Target:  5'- --gGUAGCgUCACCgUCGACCUGgaUGACg -3'
miRNA:   3'- caaCAUCGaGGUGG-GGCUGGAC--ACUG- -5'
19769 3' -55.6 NC_004687.1 + 129362 0.69 0.769467
Target:  5'- -cUGUAagucgcccGCUCCACCCUGACaa-UGACg -3'
miRNA:   3'- caACAU--------CGAGGUGGGGCUGgacACUG- -5'
19769 3' -55.6 NC_004687.1 + 3735 0.71 0.639002
Target:  5'- ----aAGCUCUacGCCCUGACCUGcaUGGCg -3'
miRNA:   3'- caacaUCGAGG--UGGGGCUGGAC--ACUG- -5'
19769 3' -55.6 NC_004687.1 + 49645 0.72 0.62868
Target:  5'- ----cGGCUCCACCCCGGCCa----- -3'
miRNA:   3'- caacaUCGAGGUGGGGCUGGacacug -5'
19769 3' -55.6 NC_004687.1 + 43064 0.75 0.450012
Target:  5'- --cGUGGCUCgCACCCgGACCUGcccGGCc -3'
miRNA:   3'- caaCAUCGAG-GUGGGgCUGGACa--CUG- -5'
19769 3' -55.6 NC_004687.1 + 114791 1.1 0.002374
Target:  5'- cGUUGUAGCUCCACCCCGACCUGUGACg -3'
miRNA:   3'- -CAACAUCGAGGUGGGGCUGGACACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.