miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19769 5' -57.6 NC_004687.1 + 137814 0.66 0.865247
Target:  5'- gCGCGcCCGGGCGAAcucGGUCaGGGcccgGCGGg -3'
miRNA:   3'- aGCGC-GGUCUGUUU---CUAG-CCC----CGCCa -5'
19769 5' -57.6 NC_004687.1 + 132187 0.66 0.865247
Target:  5'- -gGCGCUgcgcagaaccuGGGCGGGGAccUCGGGGaGGUu -3'
miRNA:   3'- agCGCGG-----------UCUGUUUCU--AGCCCCgCCA- -5'
19769 5' -57.6 NC_004687.1 + 102389 0.66 0.865247
Target:  5'- -gGCGCCggGGACGuacuccAGGcCGuGGGCGGUg -3'
miRNA:   3'- agCGCGG--UCUGUu-----UCUaGC-CCCGCCA- -5'
19769 5' -57.6 NC_004687.1 + 153114 0.66 0.858488
Target:  5'- gCGCGUagUAGACAAAGGcguagccgucgccgcCGGGcGCGGUg -3'
miRNA:   3'- aGCGCG--GUCUGUUUCUa--------------GCCC-CGCCA- -5'
19769 5' -57.6 NC_004687.1 + 78000 0.66 0.857727
Target:  5'- cCGCGCCGucGAC-GAGAUgggcaUGGGGcCGGa -3'
miRNA:   3'- aGCGCGGU--CUGuUUCUA-----GCCCC-GCCa -5'
19769 5' -57.6 NC_004687.1 + 110925 0.66 0.857727
Target:  5'- aUCGUGUCGcccGCGAAGAucuugUCGGGGuCGGc -3'
miRNA:   3'- -AGCGCGGUc--UGUUUCU-----AGCCCC-GCCa -5'
19769 5' -57.6 NC_004687.1 + 85022 0.66 0.855432
Target:  5'- aCGCGCCGGACccggccaccgucccGGAGGUCcccGGGCa-- -3'
miRNA:   3'- aGCGCGGUCUG--------------UUUCUAGc--CCCGcca -5'
19769 5' -57.6 NC_004687.1 + 101151 0.66 0.850008
Target:  5'- cUCGCGgcccucCCGGAUGGucuGGUCGGcGGUGGg -3'
miRNA:   3'- -AGCGC------GGUCUGUUu--CUAGCC-CCGCCa -5'
19769 5' -57.6 NC_004687.1 + 68999 0.66 0.850008
Target:  5'- cUGCGCCGGGuuCGAcGGAUCGuuGCGGUu -3'
miRNA:   3'- aGCGCGGUCU--GUU-UCUAGCccCGCCA- -5'
19769 5' -57.6 NC_004687.1 + 16852 0.66 0.850008
Target:  5'- cUGCGCaGGAUGAucucGUCGGuGGCGGUg -3'
miRNA:   3'- aGCGCGgUCUGUUuc--UAGCC-CCGCCA- -5'
19769 5' -57.6 NC_004687.1 + 16309 0.66 0.842097
Target:  5'- aUG-GCCAG-CGAcgGGAUCuGGGCGGUc -3'
miRNA:   3'- aGCgCGGUCuGUU--UCUAGcCCCGCCA- -5'
19769 5' -57.6 NC_004687.1 + 104956 0.66 0.842097
Target:  5'- gUCGcCGCCAGGuCGAGGcgGUUGaGGCGGa -3'
miRNA:   3'- -AGC-GCGGUCU-GUUUC--UAGCcCCGCCa -5'
19769 5' -57.6 NC_004687.1 + 131954 0.66 0.833999
Target:  5'- aUGUGCUGGuCGAcGAUCGaggucGGGCGGUa -3'
miRNA:   3'- aGCGCGGUCuGUUuCUAGC-----CCCGCCA- -5'
19769 5' -57.6 NC_004687.1 + 77666 0.66 0.833999
Target:  5'- uUCGaccagGCCGGACucaacgcccuGGAGAgCGcGGGCGGUg -3'
miRNA:   3'- -AGCg----CGGUCUG----------UUUCUaGC-CCCGCCA- -5'
19769 5' -57.6 NC_004687.1 + 80273 0.66 0.833999
Target:  5'- cCGagGCCGGACAGgugucucucGGcUCGGcGGCGGg -3'
miRNA:   3'- aGCg-CGGUCUGUU---------UCuAGCC-CCGCCa -5'
19769 5' -57.6 NC_004687.1 + 70477 0.66 0.831534
Target:  5'- -aGCGCCGGGCGAuccugggcauggacGGAUCGGucacGcCGGUg -3'
miRNA:   3'- agCGCGGUCUGUU--------------UCUAGCCc---C-GCCA- -5'
19769 5' -57.6 NC_004687.1 + 50464 0.67 0.825722
Target:  5'- gCGCGCCGGAuCGcGGcGUUGuuGGGCGGa -3'
miRNA:   3'- aGCGCGGUCU-GUuUC-UAGC--CCCGCCa -5'
19769 5' -57.6 NC_004687.1 + 47533 0.67 0.825722
Target:  5'- cUCGCGCUcgcuGGCGauGAGuGUCGGGGUGa- -3'
miRNA:   3'- -AGCGCGGu---CUGU--UUC-UAGCCCCGCca -5'
19769 5' -57.6 NC_004687.1 + 3843 0.67 0.825722
Target:  5'- aCGCgGCCAugUAAAGGUCGGuGGcCGGg -3'
miRNA:   3'- aGCG-CGGUcuGUUUCUAGCC-CC-GCCa -5'
19769 5' -57.6 NC_004687.1 + 85719 0.67 0.823206
Target:  5'- gUCGaagGCCGGACcguAGAaguccuggaugucgUCGGGGuCGGUg -3'
miRNA:   3'- -AGCg--CGGUCUGuu-UCU--------------AGCCCC-GCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.