miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19770 3' -55.7 NC_004687.1 + 33595 0.66 0.888215
Target:  5'- aUGAGUcgucgugacaucGCCAaGGuCAuGGUGGCCCACGg -3'
miRNA:   3'- -AUUCG------------UGGU-CUuGU-CCACCGGGUGUa -5'
19770 3' -55.7 NC_004687.1 + 24508 0.66 0.888215
Target:  5'- ----gGCCAGGACaAGGUGGgCCUGCGc -3'
miRNA:   3'- auucgUGGUCUUG-UCCACC-GGGUGUa -5'
19770 3' -55.7 NC_004687.1 + 71695 0.66 0.888215
Target:  5'- cGAGCACCuG-AUGGGUGGCCa---- -3'
miRNA:   3'- aUUCGUGGuCuUGUCCACCGGgugua -5'
19770 3' -55.7 NC_004687.1 + 73675 0.66 0.881083
Target:  5'- -cAGCAUCaccaccauGGAGCGGaUGGCCUACAUc -3'
miRNA:   3'- auUCGUGG--------UCUUGUCcACCGGGUGUA- -5'
19770 3' -55.7 NC_004687.1 + 146526 0.66 0.881083
Target:  5'- aGAGcCGCgAGGACaAGGUGGCCaucugGCAg -3'
miRNA:   3'- aUUC-GUGgUCUUG-UCCACCGGg----UGUa -5'
19770 3' -55.7 NC_004687.1 + 38472 0.66 0.881083
Target:  5'- --cGC-CCAGGACGcGGUGGCCgAUc- -3'
miRNA:   3'- auuCGuGGUCUUGU-CCACCGGgUGua -5'
19770 3' -55.7 NC_004687.1 + 122700 0.66 0.881083
Target:  5'- cAAGCGCCGGAuGCAGGUGaugaagcgcGUCUACc- -3'
miRNA:   3'- aUUCGUGGUCU-UGUCCAC---------CGGGUGua -5'
19770 3' -55.7 NC_004687.1 + 82321 0.66 0.881083
Target:  5'- gAGGUaguccaGCCAGGuACcGGUGGUCCGCGc -3'
miRNA:   3'- aUUCG------UGGUCU-UGuCCACCGGGUGUa -5'
19770 3' -55.7 NC_004687.1 + 37040 0.66 0.873717
Target:  5'- -cGGCGCCGGAugGCGGGUGcacgauGCgCACGg -3'
miRNA:   3'- auUCGUGGUCU--UGUCCAC------CGgGUGUa -5'
19770 3' -55.7 NC_004687.1 + 143855 0.66 0.866121
Target:  5'- gUGAGCGCUGaccuccucGAAUAGGUGaggaggcaaaguGCCCGCAUa -3'
miRNA:   3'- -AUUCGUGGU--------CUUGUCCAC------------CGGGUGUA- -5'
19770 3' -55.7 NC_004687.1 + 114568 0.66 0.866121
Target:  5'- cAAGUACCAGGACAaGcUGGUCgACGUc -3'
miRNA:   3'- aUUCGUGGUCUUGUcC-ACCGGgUGUA- -5'
19770 3' -55.7 NC_004687.1 + 67787 0.66 0.850267
Target:  5'- uUGAGCACCAGGGCGGuGaucaGGCCUcggaacuuguACAUc -3'
miRNA:   3'- -AUUCGUGGUCUUGUC-Ca---CCGGG----------UGUA- -5'
19770 3' -55.7 NC_004687.1 + 85401 0.66 0.850267
Target:  5'- --cGCAUUGGcgauGCGGGUGGCCgACGg -3'
miRNA:   3'- auuCGUGGUCu---UGUCCACCGGgUGUa -5'
19770 3' -55.7 NC_004687.1 + 111073 0.67 0.842023
Target:  5'- --cGcCACCGGGAgGGGUGGCgCugGg -3'
miRNA:   3'- auuC-GUGGUCUUgUCCACCGgGugUa -5'
19770 3' -55.7 NC_004687.1 + 75522 0.67 0.842023
Target:  5'- --cGCACCgaGGGACAGGUGuCCgGCGa -3'
miRNA:   3'- auuCGUGG--UCUUGUCCACcGGgUGUa -5'
19770 3' -55.7 NC_004687.1 + 69082 0.67 0.833576
Target:  5'- --cGCGCCAGAGCGGGUGaucaCCgACc- -3'
miRNA:   3'- auuCGUGGUCUUGUCCACc---GGgUGua -5'
19770 3' -55.7 NC_004687.1 + 118262 0.67 0.824936
Target:  5'- aUGAGC-CUGGAcgaGCAGGUGGCCgAgAUc -3'
miRNA:   3'- -AUUCGuGGUCU---UGUCCACCGGgUgUA- -5'
19770 3' -55.7 NC_004687.1 + 21355 0.67 0.824936
Target:  5'- gGAGCGCCAuu-CGGGcgUGGCCCAg-- -3'
miRNA:   3'- aUUCGUGGUcuuGUCC--ACCGGGUgua -5'
19770 3' -55.7 NC_004687.1 + 106915 0.67 0.816109
Target:  5'- -uGGCGCCGGGgcgggcGCGGGUGGCgCGa-- -3'
miRNA:   3'- auUCGUGGUCU------UGUCCACCGgGUgua -5'
19770 3' -55.7 NC_004687.1 + 66805 0.67 0.815217
Target:  5'- gGGGCaACCAGGccAUGGGagguuccugguaaUGGCCCGCAUc -3'
miRNA:   3'- aUUCG-UGGUCU--UGUCC-------------ACCGGGUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.