miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19770 3' -55.7 NC_004687.1 + 116006 0.67 0.807106
Target:  5'- aUGAGCGCCAGuGGCAGGa-GCaCCGCGc -3'
miRNA:   3'- -AUUCGUGGUC-UUGUCCacCG-GGUGUa -5'
19770 3' -55.7 NC_004687.1 + 100354 0.67 0.806196
Target:  5'- aAAGaCACCAGGACagGGGUucgaguccccucaGGUCCACGUu -3'
miRNA:   3'- aUUC-GUGGUCUUG--UCCA-------------CCGGGUGUA- -5'
19770 3' -55.7 NC_004687.1 + 16217 0.68 0.797935
Target:  5'- --uGCGCCGcGAACAGGccuucgcccaccUGGCCCAg-- -3'
miRNA:   3'- auuCGUGGU-CUUGUCC------------ACCGGGUgua -5'
19770 3' -55.7 NC_004687.1 + 101655 0.68 0.797935
Target:  5'- -cGGCACCAGcGCGGuGUuGCCCGCc- -3'
miRNA:   3'- auUCGUGGUCuUGUC-CAcCGGGUGua -5'
19770 3' -55.7 NC_004687.1 + 74483 0.68 0.788605
Target:  5'- gGGGCACCGGcaugaaguACgAGGcccaGGCCCGCAUg -3'
miRNA:   3'- aUUCGUGGUCu-------UG-UCCa---CCGGGUGUA- -5'
19770 3' -55.7 NC_004687.1 + 101777 0.68 0.779126
Target:  5'- cAGGCuuGCCGG-ACAGG-GuGCCCACGUc -3'
miRNA:   3'- aUUCG--UGGUCuUGUCCaC-CGGGUGUA- -5'
19770 3' -55.7 NC_004687.1 + 101740 0.68 0.779126
Target:  5'- cGAGCAgCGGccUGGGUGGCCCcaGCAg -3'
miRNA:   3'- aUUCGUgGUCuuGUCCACCGGG--UGUa -5'
19770 3' -55.7 NC_004687.1 + 42543 0.68 0.769507
Target:  5'- -cAGCAUCAGGuuCGGGUGGCCgguUACGg -3'
miRNA:   3'- auUCGUGGUCUu-GUCCACCGG---GUGUa -5'
19770 3' -55.7 NC_004687.1 + 96961 0.68 0.759759
Target:  5'- aGGGCACCAGAcauuGCGGGUguGGCCgAa-- -3'
miRNA:   3'- aUUCGUGGUCU----UGUCCA--CCGGgUgua -5'
19770 3' -55.7 NC_004687.1 + 10074 0.68 0.749891
Target:  5'- -cGGCACCcuGAGCAa-UGGCCCGCAc -3'
miRNA:   3'- auUCGUGGu-CUUGUccACCGGGUGUa -5'
19770 3' -55.7 NC_004687.1 + 119108 0.69 0.739913
Target:  5'- -cGGCGCCGGGACAuGaucacugcccaUGGCCCACu- -3'
miRNA:   3'- auUCGUGGUCUUGUcC-----------ACCGGGUGua -5'
19770 3' -55.7 NC_004687.1 + 61595 0.69 0.709423
Target:  5'- -cGGUACCAGcGCAGGUGG-UCGCGg -3'
miRNA:   3'- auUCGUGGUCuUGUCCACCgGGUGUa -5'
19770 3' -55.7 NC_004687.1 + 133893 0.7 0.667842
Target:  5'- cAGGCGCCAGAGCuGcaGGCCCGgAc -3'
miRNA:   3'- aUUCGUGGUCUUGuCcaCCGGGUgUa -5'
19770 3' -55.7 NC_004687.1 + 117528 0.7 0.657346
Target:  5'- gGGGCGCCc---CGGGUGGCCCAgGc -3'
miRNA:   3'- aUUCGUGGucuuGUCCACCGGGUgUa -5'
19770 3' -55.7 NC_004687.1 + 136126 0.7 0.654193
Target:  5'- uUGAGCAUCAGAGCgauccacucgucguGGGUGGCCgGgGc -3'
miRNA:   3'- -AUUCGUGGUCUUG--------------UCCACCGGgUgUa -5'
19770 3' -55.7 NC_004687.1 + 86719 0.7 0.646829
Target:  5'- --cGCACCGGucUGGGUGGCCUGCc- -3'
miRNA:   3'- auuCGUGGUCuuGUCCACCGGGUGua -5'
19770 3' -55.7 NC_004687.1 + 82128 0.7 0.6363
Target:  5'- -cAGCGCCGGuagcgcGACAGGUGGCCgugGCGg -3'
miRNA:   3'- auUCGUGGUC------UUGUCCACCGGg--UGUa -5'
19770 3' -55.7 NC_004687.1 + 144467 0.71 0.615239
Target:  5'- -uGGCGCCGuGGCAGGgcaucgUGGCCCACu- -3'
miRNA:   3'- auUCGUGGUcUUGUCC------ACCGGGUGua -5'
19770 3' -55.7 NC_004687.1 + 88043 0.71 0.604724
Target:  5'- --cGCACCGGcGCcgAGGUGGCCCGu-- -3'
miRNA:   3'- auuCGUGGUCuUG--UCCACCGGGUgua -5'
19770 3' -55.7 NC_004687.1 + 45856 0.71 0.604724
Target:  5'- --cGCGCCGGAcggucgagccGguGGUGGUCCGCGa -3'
miRNA:   3'- auuCGUGGUCU----------UguCCACCGGGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.