miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19770 5' -56.9 NC_004687.1 + 77041 0.66 0.878159
Target:  5'- gAAUCAGGucgccCGgcaccagGUUGGUCGGCGGa- -3'
miRNA:   3'- gUUAGUCCc----GCa------CGACCAGCCGUCac -5'
19770 5' -56.9 NC_004687.1 + 131075 0.66 0.878159
Target:  5'- cCGGUCGGGGuCGgugauguccUGCacGG-CGGCGGUGa -3'
miRNA:   3'- -GUUAGUCCC-GC---------ACGa-CCaGCCGUCAC- -5'
19770 5' -56.9 NC_004687.1 + 120743 0.66 0.863446
Target:  5'- uCGAUCAucuGGGUGacGaCUGGaCGGCGGUGu -3'
miRNA:   3'- -GUUAGU---CCCGCa-C-GACCaGCCGUCAC- -5'
19770 5' -56.9 NC_004687.1 + 39076 0.66 0.853432
Target:  5'- uCAAgggCAuGGGCGUGCcGGUCagcgacaagacgcuGGCGGUc -3'
miRNA:   3'- -GUUa--GU-CCCGCACGaCCAG--------------CCGUCAc -5'
19770 5' -56.9 NC_004687.1 + 39726 0.66 0.847899
Target:  5'- uCAAUCucGGCGuUGCacUGGUCGGCGa-- -3'
miRNA:   3'- -GUUAGucCCGC-ACG--ACCAGCCGUcac -5'
19770 5' -56.9 NC_004687.1 + 136844 0.66 0.847899
Target:  5'- gAGUCc-GGCGgcacCUGGUCGGUGGUGc -3'
miRNA:   3'- gUUAGucCCGCac--GACCAGCCGUCAC- -5'
19770 5' -56.9 NC_004687.1 + 52659 0.67 0.831567
Target:  5'- uCGAUCAGGGCGcggGCguagcggaccUGGUCGcCGGUc -3'
miRNA:   3'- -GUUAGUCCCGCa--CG----------ACCAGCcGUCAc -5'
19770 5' -56.9 NC_004687.1 + 63829 0.67 0.831567
Target:  5'- uGAUCGGcGCGgacGCggucgaGGUUGGCGGUGg -3'
miRNA:   3'- gUUAGUCcCGCa--CGa-----CCAGCCGUCAC- -5'
19770 5' -56.9 NC_004687.1 + 51953 0.67 0.823126
Target:  5'- gGGUCAuGGaCGaGCUGGUCGGCauggcAGUGc -3'
miRNA:   3'- gUUAGUcCC-GCaCGACCAGCCG-----UCAC- -5'
19770 5' -56.9 NC_004687.1 + 70971 0.67 0.804842
Target:  5'- aGGUCAaGGCGUcggcugaggccgcGCUGGUCuGGCuGGUGg -3'
miRNA:   3'- gUUAGUcCCGCA-------------CGACCAG-CCG-UCAC- -5'
19770 5' -56.9 NC_004687.1 + 133186 0.68 0.787702
Target:  5'- cCGGUCAGGGCGUcgacagcggccaGCaGGgcgagcagaUCGGCAGg- -3'
miRNA:   3'- -GUUAGUCCCGCA------------CGaCC---------AGCCGUCac -5'
19770 5' -56.9 NC_004687.1 + 85084 0.68 0.778475
Target:  5'- -----cGGGUGUGCaggcuggucgGGUCGGUGGUGa -3'
miRNA:   3'- guuaguCCCGCACGa---------CCAGCCGUCAC- -5'
19770 5' -56.9 NC_004687.1 + 112583 0.68 0.740341
Target:  5'- cCGGUUuucuGGGGCGgugaGCUGGUUGGguGg- -3'
miRNA:   3'- -GUUAG----UCCCGCa---CGACCAGCCguCac -5'
19770 5' -56.9 NC_004687.1 + 67743 0.68 0.740341
Target:  5'- gCGAUCGGgugaaGGCGUcagcGCUGGUgCGGUAGUc -3'
miRNA:   3'- -GUUAGUC-----CCGCA----CGACCA-GCCGUCAc -5'
19770 5' -56.9 NC_004687.1 + 147273 0.68 0.740341
Target:  5'- --cUUGGGGCGUGUUGucGUCGGUcugcgGGUGa -3'
miRNA:   3'- guuAGUCCCGCACGAC--CAGCCG-----UCAC- -5'
19770 5' -56.9 NC_004687.1 + 42479 0.7 0.670323
Target:  5'- cCGAUUucGGCGUaguacccguGCgGGUCGGCGGUGu -3'
miRNA:   3'- -GUUAGucCCGCA---------CGaCCAGCCGUCAC- -5'
19770 5' -56.9 NC_004687.1 + 11238 0.7 0.670323
Target:  5'- ---cCGGuuGGCGUcGUUGGUCGGCAGg- -3'
miRNA:   3'- guuaGUC--CCGCA-CGACCAGCCGUCac -5'
19770 5' -56.9 NC_004687.1 + 103261 0.7 0.660125
Target:  5'- aCGAUUAGGGCgGUGCUcGUC-GCAGUa -3'
miRNA:   3'- -GUUAGUCCCG-CACGAcCAGcCGUCAc -5'
19770 5' -56.9 NC_004687.1 + 104912 0.7 0.660125
Target:  5'- uGGUCGGcuGCuUGCUGGUCGGC-GUGg -3'
miRNA:   3'- gUUAGUCc-CGcACGACCAGCCGuCAC- -5'
19770 5' -56.9 NC_004687.1 + 95056 0.71 0.60896
Target:  5'- -cAUCAGGGCGaagUGGUCGGCcagGGUGc -3'
miRNA:   3'- guUAGUCCCGCacgACCAGCCG---UCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.