miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19771 3' -54.4 NC_004687.1 + 103221 0.66 0.947762
Target:  5'- ---gGCAGGUCGCagugauccgaGGUGCGGGcuUGCg- -3'
miRNA:   3'- gcaaCGUCCAGUG----------CUACGUCC--ACGag -5'
19771 3' -54.4 NC_004687.1 + 88314 0.66 0.943734
Target:  5'- gGUcgGCGGGUCcucggggucccagccGCGAUGCcAGGUcgcgucguacaucuGCUCg -3'
miRNA:   3'- gCAa-CGUCCAG---------------UGCUACG-UCCA--------------CGAG- -5'
19771 3' -54.4 NC_004687.1 + 6447 0.66 0.938541
Target:  5'- aCGgcGC-GGUCAUGcugGCcaagaGGGUGCUCg -3'
miRNA:   3'- -GCaaCGuCCAGUGCua-CG-----UCCACGAG- -5'
19771 3' -54.4 NC_004687.1 + 102250 0.66 0.933563
Target:  5'- ---cGCAGGUCGggcCGAUGCcgauGUGCUUg -3'
miRNA:   3'- gcaaCGUCCAGU---GCUACGuc--CACGAG- -5'
19771 3' -54.4 NC_004687.1 + 116656 0.66 0.933563
Target:  5'- uGgcGCAGGgcCAgGGuggacUGCAGGUGCUg -3'
miRNA:   3'- gCaaCGUCCa-GUgCU-----ACGUCCACGAg -5'
19771 3' -54.4 NC_004687.1 + 113729 0.66 0.928337
Target:  5'- aGUUGCcgaccAGGUagACGAUGCAGGga-UCg -3'
miRNA:   3'- gCAACG-----UCCAg-UGCUACGUCCacgAG- -5'
19771 3' -54.4 NC_004687.1 + 141020 0.67 0.922863
Target:  5'- gCGgcugGCGGG-CACGGUGUAGGUuccaGCg- -3'
miRNA:   3'- -GCaa--CGUCCaGUGCUACGUCCA----CGag -5'
19771 3' -54.4 NC_004687.1 + 147559 0.67 0.911174
Target:  5'- ---aGCGGGcCAUGAUGCuugucgagcuGGUGCUg -3'
miRNA:   3'- gcaaCGUCCaGUGCUACGu---------CCACGAg -5'
19771 3' -54.4 NC_004687.1 + 10256 0.67 0.904961
Target:  5'- ---gGCAGuG-CGCGAggugagguccgGCAGGUGCUCc -3'
miRNA:   3'- gcaaCGUC-CaGUGCUa----------CGUCCACGAG- -5'
19771 3' -54.4 NC_004687.1 + 92123 0.67 0.898505
Target:  5'- gGUUGC-GGUCGcCGGUGCccgacgacgacaGGGUGgUCu -3'
miRNA:   3'- gCAACGuCCAGU-GCUACG------------UCCACgAG- -5'
19771 3' -54.4 NC_004687.1 + 145905 0.68 0.89181
Target:  5'- uGUUGCGGGUCgagaccACGGUGaAGGUaGCg- -3'
miRNA:   3'- gCAACGUCCAG------UGCUACgUCCA-CGag -5'
19771 3' -54.4 NC_004687.1 + 35242 0.68 0.89181
Target:  5'- uGUgGCAGGUCuccccGCGAUGCuGGUcUUCg -3'
miRNA:   3'- gCAaCGUCCAG-----UGCUACGuCCAcGAG- -5'
19771 3' -54.4 NC_004687.1 + 26636 0.68 0.870324
Target:  5'- aCGUggucGCucauGGGUCuccuCGGUGUGGGUGUUCu -3'
miRNA:   3'- -GCAa---CG----UCCAGu---GCUACGUCCACGAG- -5'
19771 3' -54.4 NC_004687.1 + 40923 0.68 0.862712
Target:  5'- uGUUGCuGGUCGcCGuggGCAGGUcGCg- -3'
miRNA:   3'- gCAACGuCCAGU-GCua-CGUCCA-CGag -5'
19771 3' -54.4 NC_004687.1 + 139446 0.68 0.852495
Target:  5'- gGUUGCGGGUCugGGggacgGUcacccgggcgacccAGGUGCcgUCg -3'
miRNA:   3'- gCAACGUCCAGugCUa----CG--------------UCCACG--AG- -5'
19771 3' -54.4 NC_004687.1 + 46061 0.69 0.850087
Target:  5'- uGUUGCAGGUCGggcaccacuCGGUGgCGGGccgggaguaguucgGCUCa -3'
miRNA:   3'- gCAACGUCCAGU---------GCUAC-GUCCa-------------CGAG- -5'
19771 3' -54.4 NC_004687.1 + 25683 0.69 0.821557
Target:  5'- cCGUcggUGCccaGGGUCAggaacCGAUGCAGGcgcaGCUCa -3'
miRNA:   3'- -GCA---ACG---UCCAGU-----GCUACGUCCa---CGAG- -5'
19771 3' -54.4 NC_004687.1 + 70115 0.71 0.746923
Target:  5'- ---aGCAGGcCGCGAagaacucacggaUGCGGGUGCg- -3'
miRNA:   3'- gcaaCGUCCaGUGCU------------ACGUCCACGag -5'
19771 3' -54.4 NC_004687.1 + 52738 0.71 0.737024
Target:  5'- gGgcgGC-GGUgGCGAUGUaaaGGGUGCUCa -3'
miRNA:   3'- gCaa-CGuCCAgUGCUACG---UCCACGAG- -5'
19771 3' -54.4 NC_004687.1 + 69245 0.71 0.72703
Target:  5'- gCGaUUGcCAGGUCgGCGGUGUAGGUcCUCu -3'
miRNA:   3'- -GC-AAC-GUCCAG-UGCUACGUCCAcGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.