miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19771 5' -58.7 NC_004687.1 + 141962 0.66 0.844559
Target:  5'- cGGGGcGACCGUccuCGUGCucGACCUCGg- -3'
miRNA:   3'- cCCUC-CUGGUAc--GCACG--CUGGAGCgc -5'
19771 5' -58.7 NC_004687.1 + 54821 0.66 0.844559
Target:  5'- cGGcGGGGugaaguguCCG-GUGUGCGGCCagCGCGc -3'
miRNA:   3'- -CC-CUCCu-------GGUaCGCACGCUGGa-GCGC- -5'
19771 5' -58.7 NC_004687.1 + 65054 0.66 0.844559
Target:  5'- cGGucgccuGGGCCAcccagcUGCGcgGCGACCgUGCGg -3'
miRNA:   3'- cCCu-----CCUGGU------ACGCa-CGCUGGaGCGC- -5'
19771 5' -58.7 NC_004687.1 + 59232 0.66 0.836658
Target:  5'- uGGGAGGACCAcGgGUGaacaccuAUCUCGUc -3'
miRNA:   3'- -CCCUCCUGGUaCgCACgc-----UGGAGCGc -5'
19771 5' -58.7 NC_004687.1 + 107162 0.66 0.803375
Target:  5'- cGGGAGGuCCAgcUGC-UGCGGCaagucgUCGCc -3'
miRNA:   3'- -CCCUCCuGGU--ACGcACGCUGg-----AGCGc -5'
19771 5' -58.7 NC_004687.1 + 12451 0.66 0.803375
Target:  5'- uGGAGGACUgAUGCcccgcacccccGacuuucGCGACCUCGUGa -3'
miRNA:   3'- cCCUCCUGG-UACG-----------Ca-----CGCUGGAGCGC- -5'
19771 5' -58.7 NC_004687.1 + 88172 0.67 0.79467
Target:  5'- cGGAcaGCCAgGCGUGCGGCC-CGUu -3'
miRNA:   3'- cCCUccUGGUaCGCACGCUGGaGCGc -5'
19771 5' -58.7 NC_004687.1 + 102645 0.67 0.79467
Target:  5'- cGGGAGG-CC-UGCG-G-GACgUCGCGc -3'
miRNA:   3'- -CCCUCCuGGuACGCaCgCUGgAGCGC- -5'
19771 5' -58.7 NC_004687.1 + 127785 0.67 0.79467
Target:  5'- ---cGGGCCugAUGCGUGaCGA-CUCGCGg -3'
miRNA:   3'- cccuCCUGG--UACGCAC-GCUgGAGCGC- -5'
19771 5' -58.7 NC_004687.1 + 142379 0.67 0.785828
Target:  5'- gGGGAGGGuuCUcgGCG-GCGACgUCGa- -3'
miRNA:   3'- -CCCUCCU--GGuaCGCaCGCUGgAGCgc -5'
19771 5' -58.7 NC_004687.1 + 68729 0.67 0.785828
Target:  5'- aGGAaugaucGaGACCGUcaaGCGUGCGGucguCCUCGCGc -3'
miRNA:   3'- cCCU------C-CUGGUA---CGCACGCU----GGAGCGC- -5'
19771 5' -58.7 NC_004687.1 + 154091 0.67 0.776855
Target:  5'- cGGcGAGG-CCGUGCGUcaGC-ACCUgGCa -3'
miRNA:   3'- -CC-CUCCuGGUACGCA--CGcUGGAgCGc -5'
19771 5' -58.7 NC_004687.1 + 22224 0.67 0.76776
Target:  5'- uGGuGGGCCAggguUGCG-GCaGCCUCGgGg -3'
miRNA:   3'- cCCuCCUGGU----ACGCaCGcUGGAGCgC- -5'
19771 5' -58.7 NC_004687.1 + 134296 0.67 0.76776
Target:  5'- cGGuGAGcccGACCAggaugGCGUGCGGCgUCGa- -3'
miRNA:   3'- -CC-CUC---CUGGUa----CGCACGCUGgAGCgc -5'
19771 5' -58.7 NC_004687.1 + 135062 0.67 0.758551
Target:  5'- cGGGccAGGGCCcgGCGcGCGGCCaCGa- -3'
miRNA:   3'- -CCC--UCCUGGuaCGCaCGCUGGaGCgc -5'
19771 5' -58.7 NC_004687.1 + 64224 0.67 0.749238
Target:  5'- uGGAgcGGACCA-GCaGUGuCGACCUCGg- -3'
miRNA:   3'- cCCU--CCUGGUaCG-CAC-GCUGGAGCgc -5'
19771 5' -58.7 NC_004687.1 + 57436 0.67 0.749238
Target:  5'- cGGcAGGACCAuggaaguuUGCGU-UGACCUUGCc -3'
miRNA:   3'- cCC-UCCUGGU--------ACGCAcGCUGGAGCGc -5'
19771 5' -58.7 NC_004687.1 + 127323 0.68 0.730328
Target:  5'- aGGuGuuGGCCGUGCGcUGCcaauCCUCGCGc -3'
miRNA:   3'- -CC-CucCUGGUACGC-ACGcu--GGAGCGC- -5'
19771 5' -58.7 NC_004687.1 + 48928 0.68 0.711099
Target:  5'- uGGAGcACCAgaucGCGcuCGGCCUCGCGg -3'
miRNA:   3'- cCCUCcUGGUa---CGCacGCUGGAGCGC- -5'
19771 5' -58.7 NC_004687.1 + 8493 0.68 0.701385
Target:  5'- -cGAGGugCuggugGCGguUGCGGCCUUGCa -3'
miRNA:   3'- ccCUCCugGua---CGC--ACGCUGGAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.