miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19771 5' -58.7 NC_004687.1 + 114556 1.1 0.001665
Target:  5'- cGGGAGGACCAUGCGUGCGACCUCGCGc -3'
miRNA:   3'- -CCCUCCUGGUACGCACGCUGGAGCGC- -5'
19771 5' -58.7 NC_004687.1 + 93084 0.78 0.228516
Target:  5'- uGGGuGGGCCGguaCGUGCG-CCUCGCGc -3'
miRNA:   3'- -CCCuCCUGGUac-GCACGCuGGAGCGC- -5'
19771 5' -58.7 NC_004687.1 + 25440 0.74 0.390983
Target:  5'- aGGuGcGucGCCGUGCGUGCGACCU-GCGg -3'
miRNA:   3'- cCCuC-C--UGGUACGCACGCUGGAgCGC- -5'
19771 5' -58.7 NC_004687.1 + 120973 0.74 0.407509
Target:  5'- cGGcGGGCCAacUGCGgagGCGACCcUUGCGg -3'
miRNA:   3'- cCCuCCUGGU--ACGCa--CGCUGG-AGCGC- -5'
19771 5' -58.7 NC_004687.1 + 105596 0.72 0.48694
Target:  5'- uGGGGGACUuca-GUGCGGCCcCGCGa -3'
miRNA:   3'- cCCUCCUGGuacgCACGCUGGaGCGC- -5'
19771 5' -58.7 NC_004687.1 + 71962 0.72 0.495292
Target:  5'- cGGGGugccguuggccGGGCCcgaggGCGUccauuccaguccgGCGACCUCGCGg -3'
miRNA:   3'- -CCCU-----------CCUGGua---CGCA-------------CGCUGGAGCGC- -5'
19771 5' -58.7 NC_004687.1 + 119207 0.71 0.534108
Target:  5'- cGGGGccugcGGGCCAU-CG-GCGuCCUCGCGg -3'
miRNA:   3'- -CCCU-----CCUGGUAcGCaCGCuGGAGCGC- -5'
19771 5' -58.7 NC_004687.1 + 40938 0.71 0.553436
Target:  5'- uGGGcAGGucgcGCCGUGCugccGCGuCCUCGCGg -3'
miRNA:   3'- -CCC-UCC----UGGUACGca--CGCuGGAGCGC- -5'
19771 5' -58.7 NC_004687.1 + 17263 0.71 0.553436
Target:  5'- uGGGcucGGACCGacgaucagcUGCGUGCGGCCUggaaccgggcCGCu -3'
miRNA:   3'- -CCCu--CCUGGU---------ACGCACGCUGGA----------GCGc -5'
19771 5' -58.7 NC_004687.1 + 138511 0.69 0.642234
Target:  5'- cGGAGG-CCAUGUc-GCGGCuCUCGCu -3'
miRNA:   3'- cCCUCCuGGUACGcaCGCUG-GAGCGc -5'
19771 5' -58.7 NC_004687.1 + 127813 0.69 0.656121
Target:  5'- cGGGAGGGCCGUGUGcagggucaaucuuccUGCGugagguCCggCGCc -3'
miRNA:   3'- -CCCUCCUGGUACGC---------------ACGCu-----GGa-GCGc -5'
19771 5' -58.7 NC_004687.1 + 31478 0.69 0.671947
Target:  5'- aGGAcgucgcGGACCGcGCGcUGCagcagcgaGACCUCGCGg -3'
miRNA:   3'- cCCU------CCUGGUaCGC-ACG--------CUGGAGCGC- -5'
19771 5' -58.7 NC_004687.1 + 81413 0.69 0.671947
Target:  5'- cGGGuucAGGGCCAgcaUGCGgGCcugGGCCUCGUa -3'
miRNA:   3'- -CCC---UCCUGGU---ACGCaCG---CUGGAGCGc -5'
19771 5' -58.7 NC_004687.1 + 8493 0.68 0.701385
Target:  5'- -cGAGGugCuggugGCGguUGCGGCCUUGCa -3'
miRNA:   3'- ccCUCCugGua---CGC--ACGCUGGAGCGc -5'
19771 5' -58.7 NC_004687.1 + 48928 0.68 0.711099
Target:  5'- uGGAGcACCAgaucGCGcuCGGCCUCGCGg -3'
miRNA:   3'- cCCUCcUGGUa---CGCacGCUGGAGCGC- -5'
19771 5' -58.7 NC_004687.1 + 127323 0.68 0.730328
Target:  5'- aGGuGuuGGCCGUGCGcUGCcaauCCUCGCGc -3'
miRNA:   3'- -CC-CucCUGGUACGC-ACGcu--GGAGCGC- -5'
19771 5' -58.7 NC_004687.1 + 64224 0.67 0.749238
Target:  5'- uGGAgcGGACCA-GCaGUGuCGACCUCGg- -3'
miRNA:   3'- cCCU--CCUGGUaCG-CAC-GCUGGAGCgc -5'
19771 5' -58.7 NC_004687.1 + 57436 0.67 0.749238
Target:  5'- cGGcAGGACCAuggaaguuUGCGU-UGACCUUGCc -3'
miRNA:   3'- cCC-UCCUGGU--------ACGCAcGCUGGAGCGc -5'
19771 5' -58.7 NC_004687.1 + 135062 0.67 0.758551
Target:  5'- cGGGccAGGGCCcgGCGcGCGGCCaCGa- -3'
miRNA:   3'- -CCC--UCCUGGuaCGCaCGCUGGaGCgc -5'
19771 5' -58.7 NC_004687.1 + 134296 0.67 0.76776
Target:  5'- cGGuGAGcccGACCAggaugGCGUGCGGCgUCGa- -3'
miRNA:   3'- -CC-CUC---CUGGUa----CGCACGCUGgAGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.