miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19772 3' -52.2 NC_004687.1 + 27228 0.66 0.990983
Target:  5'- aGUCGcacagaCGCCcGUUGAGggGAugACCg -3'
miRNA:   3'- cUAGCa-----GCGGcCAGCUCaaCUugUGG- -5'
19772 3' -52.2 NC_004687.1 + 80745 0.66 0.990983
Target:  5'- -cUCGUUuCCGGccccgggCGAGgcGGGCACCc -3'
miRNA:   3'- cuAGCAGcGGCCa------GCUCaaCUUGUGG- -5'
19772 3' -52.2 NC_004687.1 + 149559 0.66 0.990983
Target:  5'- -cUCGUaCGCCGGagGAGgucaaccUGGucaGCACCc -3'
miRNA:   3'- cuAGCA-GCGGCCagCUCa------ACU---UGUGG- -5'
19772 3' -52.2 NC_004687.1 + 80657 0.66 0.990983
Target:  5'- ---aGUCGCCGGUCuGGUcgacaaacGAGCgGCCa -3'
miRNA:   3'- cuagCAGCGGCCAGcUCAa-------CUUG-UGG- -5'
19772 3' -52.2 NC_004687.1 + 88700 0.66 0.990983
Target:  5'- -cUCGaCGCCGGUCGGGcgguggucgGGGguCCa -3'
miRNA:   3'- cuAGCaGCGGCCAGCUCaa-------CUUguGG- -5'
19772 3' -52.2 NC_004687.1 + 72803 0.66 0.990983
Target:  5'- --aCGUUGCCGGUgGugcccacGUUGAcACACUc -3'
miRNA:   3'- cuaGCAGCGGCCAgCu------CAACU-UGUGG- -5'
19772 3' -52.2 NC_004687.1 + 111160 0.66 0.990619
Target:  5'- uGUUGUUGcCCGGcuggcccggugUCGGGUUGGucgcgcugccugccGCACCa -3'
miRNA:   3'- cUAGCAGC-GGCC-----------AGCUCAACU--------------UGUGG- -5'
19772 3' -52.2 NC_004687.1 + 2542 0.66 0.989725
Target:  5'- cGGUCgGUC-CCGGUCGAGUcGuccAgGCCc -3'
miRNA:   3'- -CUAG-CAGcGGCCAGCUCAaCu--UgUGG- -5'
19772 3' -52.2 NC_004687.1 + 86065 0.66 0.989725
Target:  5'- uAUCGcCGCCGGUCaggccGGUgacguccuuggUGAGCGCg -3'
miRNA:   3'- cUAGCaGCGGCCAGc----UCA-----------ACUUGUGg -5'
19772 3' -52.2 NC_004687.1 + 35616 0.66 0.989725
Target:  5'- --aCGUCGCCGGaaacaggCGcGccaaGAGCACCg -3'
miRNA:   3'- cuaGCAGCGGCCa------GCuCaa--CUUGUGG- -5'
19772 3' -52.2 NC_004687.1 + 67976 0.66 0.989725
Target:  5'- --cCGUacgaGCCGGUCGAcGgcGGGCcgACCa -3'
miRNA:   3'- cuaGCAg---CGGCCAGCU-CaaCUUG--UGG- -5'
19772 3' -52.2 NC_004687.1 + 112161 0.66 0.989592
Target:  5'- aGAUCGUCcacagcuGCCuGGUgGAucgcGUgGAGCGCCa -3'
miRNA:   3'- -CUAGCAG-------CGG-CCAgCU----CAaCUUGUGG- -5'
19772 3' -52.2 NC_004687.1 + 36686 0.66 0.988335
Target:  5'- --aCGUCGaCUgGGUCGAGgacGAGgACCg -3'
miRNA:   3'- cuaGCAGC-GG-CCAGCUCaa-CUUgUGG- -5'
19772 3' -52.2 NC_004687.1 + 50799 0.66 0.988335
Target:  5'- -uUCGaUCuGCgGGUCGAccacGUUGAACAgCa -3'
miRNA:   3'- cuAGC-AG-CGgCCAGCU----CAACUUGUgG- -5'
19772 3' -52.2 NC_004687.1 + 29277 0.66 0.988335
Target:  5'- -cUCGUgCGCCa-UCGAGgUGAACACg -3'
miRNA:   3'- cuAGCA-GCGGccAGCUCaACUUGUGg -5'
19772 3' -52.2 NC_004687.1 + 77551 0.66 0.988335
Target:  5'- uGUUG-CGCCaGUCGAGcUUGuucAGCGCCu -3'
miRNA:   3'- cUAGCaGCGGcCAGCUC-AAC---UUGUGG- -5'
19772 3' -52.2 NC_004687.1 + 76487 0.66 0.988335
Target:  5'- cGUCGUCGUugaGGUCGAucUGAACGu- -3'
miRNA:   3'- cUAGCAGCGg--CCAGCUcaACUUGUgg -5'
19772 3' -52.2 NC_004687.1 + 121199 0.66 0.988335
Target:  5'- cGUCGUCGgCGGgCGcGUccUGAGgACCg -3'
miRNA:   3'- cUAGCAGCgGCCaGCuCA--ACUUgUGG- -5'
19772 3' -52.2 NC_004687.1 + 27720 0.66 0.986803
Target:  5'- -uUCGUCGa-GGUCGGGaUGu-CGCCg -3'
miRNA:   3'- cuAGCAGCggCCAGCUCaACuuGUGG- -5'
19772 3' -52.2 NC_004687.1 + 89423 0.66 0.986803
Target:  5'- cGAUCaggUGCCGGaucgcuUCGAGcUUGGugGCCc -3'
miRNA:   3'- -CUAGca-GCGGCC------AGCUC-AACUugUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.