miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19772 5' -56.1 NC_004687.1 + 74852 0.66 0.892991
Target:  5'- cAGGGUGacCGCCUCG-UCGGCGa--- -3'
miRNA:   3'- -UUCUACaaGCGGAGCuAGCCGCccuu -5'
19772 5' -56.1 NC_004687.1 + 106502 0.66 0.886135
Target:  5'- cGAGAUGUUggggGUgUCG-UCGGUGGGAGc -3'
miRNA:   3'- -UUCUACAAg---CGgAGCuAGCCGCCCUU- -5'
19772 5' -56.1 NC_004687.1 + 144041 0.67 0.848504
Target:  5'- cAAGAUGUaCGCCaaUCGGUCGGacccGGAGa -3'
miRNA:   3'- -UUCUACAaGCGG--AGCUAGCCgc--CCUU- -5'
19772 5' -56.1 NC_004687.1 + 23992 0.67 0.831998
Target:  5'- -cGGUGUaUCGCUUCGAacUGGCGGGc- -3'
miRNA:   3'- uuCUACA-AGCGGAGCUa-GCCGCCCuu -5'
19772 5' -56.1 NC_004687.1 + 110732 0.67 0.823461
Target:  5'- -uGGUGgucugCGCCgccgCGuuGUCGGCGGGGGu -3'
miRNA:   3'- uuCUACaa---GCGGa---GC--UAGCCGCCCUU- -5'
19772 5' -56.1 NC_004687.1 + 83309 0.67 0.814746
Target:  5'- ----aGUUCGCCUacuacUCGGCGGGGc -3'
miRNA:   3'- uucuaCAAGCGGAgcu--AGCCGCCCUu -5'
19772 5' -56.1 NC_004687.1 + 80284 0.68 0.759192
Target:  5'- cAGGUGUcucUCGgCUCGG-CGGCGGGc- -3'
miRNA:   3'- uUCUACA---AGCgGAGCUaGCCGCCCuu -5'
19772 5' -56.1 NC_004687.1 + 119548 0.69 0.719726
Target:  5'- ---cUGUUCGaCUCGAUCGGCGGc-- -3'
miRNA:   3'- uucuACAAGCgGAGCUAGCCGCCcuu -5'
19772 5' -56.1 NC_004687.1 + 88287 0.7 0.689284
Target:  5'- gGAGAaguUGUUCGgCUCGugaaugcggGUCGGCGGGu- -3'
miRNA:   3'- -UUCU---ACAAGCgGAGC---------UAGCCGCCCuu -5'
19772 5' -56.1 NC_004687.1 + 12803 0.82 0.150061
Target:  5'- cAAGcUGUUCGUCUCGAUCGGCGGcGAc -3'
miRNA:   3'- -UUCuACAAGCGGAGCUAGCCGCC-CUu -5'
19772 5' -56.1 NC_004687.1 + 113789 1.03 0.005669
Target:  5'- gAAGAUGUUCGCCUCGAUCGGCGGGAAc -3'
miRNA:   3'- -UUCUACAAGCGGAGCUAGCCGCCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.