miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19773 3' -57.2 NC_004687.1 + 152846 0.66 0.887236
Target:  5'- uCCAGGCCuggugcuggcauccACGAcAGGCCGcaGUGCcacucuuucugcucGGUCc -3'
miRNA:   3'- -GGUCCGGu-------------UGCU-UCCGGC--UACG--------------CCAG- -5'
19773 3' -57.2 NC_004687.1 + 138985 0.66 0.886559
Target:  5'- gCGGcGgCAGCGGAGGCCcgGGUGcCGGa- -3'
miRNA:   3'- gGUC-CgGUUGCUUCCGG--CUAC-GCCag -5'
19773 3' -57.2 NC_004687.1 + 5383 0.66 0.886559
Target:  5'- aCCuGGCCAA-GGAGGaCUGAUgaacaccgaagaGCGGUUu -3'
miRNA:   3'- -GGuCCGGUUgCUUCC-GGCUA------------CGCCAG- -5'
19773 3' -57.2 NC_004687.1 + 111984 0.66 0.886559
Target:  5'- gCGGGCCGuucugcagcGCGucGGCaCGcuUGCGGUa -3'
miRNA:   3'- gGUCCGGU---------UGCuuCCG-GCu-ACGCCAg -5'
19773 3' -57.2 NC_004687.1 + 98804 0.66 0.886559
Target:  5'- gCAGGCCGaccaGCGAggcguAGGCCcGUGCGc-- -3'
miRNA:   3'- gGUCCGGU----UGCU-----UCCGGcUACGCcag -5'
19773 3' -57.2 NC_004687.1 + 109419 0.66 0.886559
Target:  5'- gCCGGGCCGACu---GCCGGUGgaCGGa- -3'
miRNA:   3'- -GGUCCGGUUGcuucCGGCUAC--GCCag -5'
19773 3' -57.2 NC_004687.1 + 104239 0.66 0.886559
Target:  5'- aUCAGGCCGcaGCGguGGCCaucucccaGAUGCaGGa- -3'
miRNA:   3'- -GGUCCGGU--UGCuuCCGG--------CUACG-CCag -5'
19773 3' -57.2 NC_004687.1 + 150247 0.66 0.886559
Target:  5'- aCGGGUC-ACGggGaacaGCuCGGUGuCGGUCu -3'
miRNA:   3'- gGUCCGGuUGCuuC----CG-GCUAC-GCCAG- -5'
19773 3' -57.2 NC_004687.1 + 110696 0.66 0.88245
Target:  5'- cCUGGcGCCGACGAcGGCCugucuuguuggucucGGUgGUGGUCu -3'
miRNA:   3'- -GGUC-CGGUUGCUuCCGG---------------CUA-CGCCAG- -5'
19773 3' -57.2 NC_004687.1 + 129979 0.66 0.879668
Target:  5'- gCGGGggaGACGGAGGCCGAagGCucGUCg -3'
miRNA:   3'- gGUCCgg-UUGCUUCCGGCUa-CGc-CAG- -5'
19773 3' -57.2 NC_004687.1 + 68198 0.66 0.879668
Target:  5'- gCGGGcCCAGCGAcaucGGCCa--GCGGUa -3'
miRNA:   3'- gGUCC-GGUUGCUu---CCGGcuaCGCCAg -5'
19773 3' -57.2 NC_004687.1 + 92246 0.66 0.879668
Target:  5'- uCCccGCCGcccucagaGCGAGGGCgGAcGgGGUCg -3'
miRNA:   3'- -GGucCGGU--------UGCUUCCGgCUaCgCCAG- -5'
19773 3' -57.2 NC_004687.1 + 4451 0.66 0.879668
Target:  5'- gCAGGCCGucGCGAcuGgCGAUGCuGGcCa -3'
miRNA:   3'- gGUCCGGU--UGCUucCgGCUACG-CCaG- -5'
19773 3' -57.2 NC_004687.1 + 147097 0.66 0.879668
Target:  5'- gCGGGUgCGACGAAGaacagaCCGGUGaUGGUCa -3'
miRNA:   3'- gGUCCG-GUUGCUUCc-----GGCUAC-GCCAG- -5'
19773 3' -57.2 NC_004687.1 + 50206 0.66 0.879668
Target:  5'- cCCGcGCUAGCGAAGGUCu---CGGUCa -3'
miRNA:   3'- -GGUcCGGUUGCUUCCGGcuacGCCAG- -5'
19773 3' -57.2 NC_004687.1 + 152170 0.66 0.879668
Target:  5'- aCCAgcGGCCAGCccAGcGCC-AUGCaGGUCa -3'
miRNA:   3'- -GGU--CCGGUUGcuUC-CGGcUACG-CCAG- -5'
19773 3' -57.2 NC_004687.1 + 145474 0.66 0.879668
Target:  5'- cCCGgguGGCCAGCGuGGGCagcugCGAcuCGGUCa -3'
miRNA:   3'- -GGU---CCGGUUGCuUCCG-----GCUacGCCAG- -5'
19773 3' -57.2 NC_004687.1 + 39301 0.66 0.879668
Target:  5'- cCCAGaCCGagcuggGCG-AGGCCcagGCGGUCg -3'
miRNA:   3'- -GGUCcGGU------UGCuUCCGGcuaCGCCAG- -5'
19773 3' -57.2 NC_004687.1 + 117606 0.66 0.878967
Target:  5'- gCCGGGUUcaccccgGGCG-AGGCCGA-GCGGc- -3'
miRNA:   3'- -GGUCCGG-------UUGCuUCCGGCUaCGCCag -5'
19773 3' -57.2 NC_004687.1 + 102255 0.66 0.878967
Target:  5'- gUCGGGCCGAU----GCCGAUGUgcuuggaGGUCg -3'
miRNA:   3'- -GGUCCGGUUGcuucCGGCUACG-------CCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.