miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19773 5' -54.9 NC_004687.1 + 114264 0.66 0.958549
Target:  5'- uGGACga-CGgcGauUCGAUCAUCGUCCg -3'
miRNA:   3'- gCCUGggaGCauC--AGCUAGUAGCGGG- -5'
19773 5' -54.9 NC_004687.1 + 144841 0.66 0.958549
Target:  5'- uCGGGCCaCgacgCGUGGUCGuggucuucuUCGagGCCUg -3'
miRNA:   3'- -GCCUGG-Ga---GCAUCAGCu--------AGUagCGGG- -5'
19773 5' -54.9 NC_004687.1 + 110778 0.66 0.958549
Target:  5'- gCGGuuCCCgUGgcGUCGGUCG-CGCCg -3'
miRNA:   3'- -GCCu-GGGaGCauCAGCUAGUaGCGGg -5'
19773 5' -54.9 NC_004687.1 + 70276 0.66 0.958549
Target:  5'- -aGAUCCgaucCGUAGaugcCGGUCAgcgCGCCCg -3'
miRNA:   3'- gcCUGGGa---GCAUCa---GCUAGUa--GCGGG- -5'
19773 5' -54.9 NC_004687.1 + 2939 0.66 0.958185
Target:  5'- uGGGCCCUgGUGGgcuUCGAcguggacUCGUgCGUCUg -3'
miRNA:   3'- gCCUGGGAgCAUC---AGCU-------AGUA-GCGGG- -5'
19773 5' -54.9 NC_004687.1 + 127667 0.66 0.954812
Target:  5'- gCGGAgCCCU-GUccgGGUCGGU-GUCGCCg -3'
miRNA:   3'- -GCCU-GGGAgCA---UCAGCUAgUAGCGGg -5'
19773 5' -54.9 NC_004687.1 + 73456 0.66 0.954812
Target:  5'- gCGGAagaCCUCGgcGUgGAUCucagCGCgCg -3'
miRNA:   3'- -GCCUg--GGAGCauCAgCUAGua--GCGgG- -5'
19773 5' -54.9 NC_004687.1 + 35591 0.66 0.953256
Target:  5'- uGGAUCg-CGUAGUCGGUCucguggugguggCGCCg -3'
miRNA:   3'- gCCUGGgaGCAUCAGCUAGua----------GCGGg -5'
19773 5' -54.9 NC_004687.1 + 112297 0.66 0.950854
Target:  5'- cCGG-CCCUCGcGG-CGcagacgCAUCGCCUu -3'
miRNA:   3'- -GCCuGGGAGCaUCaGCua----GUAGCGGG- -5'
19773 5' -54.9 NC_004687.1 + 35513 0.66 0.950854
Target:  5'- aGGGCCC----GGUCGAUCcacUGCCCc -3'
miRNA:   3'- gCCUGGGagcaUCAGCUAGua-GCGGG- -5'
19773 5' -54.9 NC_004687.1 + 129446 0.66 0.948371
Target:  5'- aGGGCCag-GUGGUCGuggggaaucuugcgcAaCGUCGCCCg -3'
miRNA:   3'- gCCUGGgagCAUCAGC---------------UaGUAGCGGG- -5'
19773 5' -54.9 NC_004687.1 + 130829 0.66 0.946671
Target:  5'- gGGGCCaC-CGgcGUgGAUCAgCGCCUu -3'
miRNA:   3'- gCCUGG-GaGCauCAgCUAGUaGCGGG- -5'
19773 5' -54.9 NC_004687.1 + 102995 0.66 0.946671
Target:  5'- cCGGACUCacacCGUGGUCGAUgAa-GUCCa -3'
miRNA:   3'- -GCCUGGGa---GCAUCAGCUAgUagCGGG- -5'
19773 5' -54.9 NC_004687.1 + 27869 0.66 0.946671
Target:  5'- gCGGGCCCgggccUCGUggaAGUCGcgCGgcgUGCCa -3'
miRNA:   3'- -GCCUGGG-----AGCA---UCAGCuaGUa--GCGGg -5'
19773 5' -54.9 NC_004687.1 + 131070 0.67 0.942259
Target:  5'- uGGGCCCggUCGgGGUCGGUgAU-GUCCu -3'
miRNA:   3'- gCCUGGG--AGCaUCAGCUAgUAgCGGG- -5'
19773 5' -54.9 NC_004687.1 + 117987 0.67 0.942259
Target:  5'- gCGGGUCCUUGgAGUCGAacUCcaUGCCCa -3'
miRNA:   3'- -GCCUGGGAGCaUCAGCU--AGuaGCGGG- -5'
19773 5' -54.9 NC_004687.1 + 40912 0.67 0.942259
Target:  5'- gCGGA-CCUCGUuGUUGcUgGUCGCCg -3'
miRNA:   3'- -GCCUgGGAGCAuCAGCuAgUAGCGGg -5'
19773 5' -54.9 NC_004687.1 + 110887 0.67 0.939502
Target:  5'- cCGGugucgucgcuccgccGCCCggCGUGccgauGUUGAUCGugUCGCCCg -3'
miRNA:   3'- -GCC---------------UGGGa-GCAU-----CAGCUAGU--AGCGGG- -5'
19773 5' -54.9 NC_004687.1 + 42811 0.67 0.937618
Target:  5'- uCGGcaauguCCgCgUCGUgGGUCGGUUGUUGCCCa -3'
miRNA:   3'- -GCCu-----GG-G-AGCA-UCAGCUAGUAGCGGG- -5'
19773 5' -54.9 NC_004687.1 + 153862 0.67 0.937618
Target:  5'- uCGGACggCUCGUAGUaGAuggcuUCAUUGCCg -3'
miRNA:   3'- -GCCUGg-GAGCAUCAgCU-----AGUAGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.