miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19775 5' -56.3 NC_004687.1 + 150637 0.66 0.927541
Target:  5'- aCGGCccgGUUGUUGGCGuugucgACCuGACGu -3'
miRNA:   3'- -GCCGcuaCAGCGACCGCua----UGG-CUGC- -5'
19775 5' -56.3 NC_004687.1 + 23147 0.66 0.927541
Target:  5'- cCGGCucaacaGcgGUCGCgUGGUGAccaucACCGACa -3'
miRNA:   3'- -GCCG------CuaCAGCG-ACCGCUa----UGGCUGc -5'
19775 5' -56.3 NC_004687.1 + 142509 0.66 0.927541
Target:  5'- gCGGCGGUGgaCGCcGcCGAUGCCGGa- -3'
miRNA:   3'- -GCCGCUACa-GCGaCcGCUAUGGCUgc -5'
19775 5' -56.3 NC_004687.1 + 77238 0.66 0.924376
Target:  5'- cCGGCGGUGUUgaacuuggGCUGGCccagcagcucuCCGGCa -3'
miRNA:   3'- -GCCGCUACAG--------CGACCGcuau-------GGCUGc -5'
19775 5' -56.3 NC_004687.1 + 103216 0.66 0.924376
Target:  5'- -cGCGAcuUCGCUgacgccgucaggaagGGCGAggcgACCGGCGa -3'
miRNA:   3'- gcCGCUacAGCGA---------------CCGCUa---UGGCUGC- -5'
19775 5' -56.3 NC_004687.1 + 19009 0.66 0.922219
Target:  5'- aGGCGAg--CGCUGGgaCGAggcUGCCGAg- -3'
miRNA:   3'- gCCGCUacaGCGACC--GCU---AUGGCUgc -5'
19775 5' -56.3 NC_004687.1 + 127735 0.66 0.922219
Target:  5'- aGGUGGUGac---GGCGAgGCCGACGg -3'
miRNA:   3'- gCCGCUACagcgaCCGCUaUGGCUGC- -5'
19775 5' -56.3 NC_004687.1 + 51280 0.66 0.922219
Target:  5'- uCGGCGcgGUCGUaaucguUGGCGAcagauuccGCCGcCGc -3'
miRNA:   3'- -GCCGCuaCAGCG------ACCGCUa-------UGGCuGC- -5'
19775 5' -56.3 NC_004687.1 + 100736 0.66 0.916666
Target:  5'- uCGGUG--GUCGaCUGGUGG-ACCGAUGc -3'
miRNA:   3'- -GCCGCuaCAGC-GACCGCUaUGGCUGC- -5'
19775 5' -56.3 NC_004687.1 + 120972 0.66 0.916666
Target:  5'- uCGGCGGgccaacugCGgaGGCGAcccUugCGGCGg -3'
miRNA:   3'- -GCCGCUaca-----GCgaCCGCU---AugGCUGC- -5'
19775 5' -56.3 NC_004687.1 + 10578 0.66 0.916666
Target:  5'- gCGGCGAcaaagGcCGCgaccgccuUGGCGAUcUCGGCGg -3'
miRNA:   3'- -GCCGCUa----CaGCG--------ACCGCUAuGGCUGC- -5'
19775 5' -56.3 NC_004687.1 + 113123 0.66 0.916666
Target:  5'- uGGCGAaguUGUCGCUGuggccguCGAUgAUCGACu -3'
miRNA:   3'- gCCGCU---ACAGCGACc------GCUA-UGGCUGc -5'
19775 5' -56.3 NC_004687.1 + 97556 0.66 0.916666
Target:  5'- gGGC-AUGUCgGCaccuaugaccgaUGGgGAUGCCGAUGu -3'
miRNA:   3'- gCCGcUACAG-CG------------ACCgCUAUGGCUGC- -5'
19775 5' -56.3 NC_004687.1 + 136591 0.66 0.916666
Target:  5'- gGGUuGUGgCGCUGGaccCGGUcACCGGCGg -3'
miRNA:   3'- gCCGcUACaGCGACC---GCUA-UGGCUGC- -5'
19775 5' -56.3 NC_004687.1 + 8487 0.66 0.916666
Target:  5'- aCGGCccgaGGUGcUGgUGGCGGUugCGGCc -3'
miRNA:   3'- -GCCG----CUACaGCgACCGCUAugGCUGc -5'
19775 5' -56.3 NC_004687.1 + 93207 0.66 0.916098
Target:  5'- gCGGCGAagcgUGUaccugaugcguugCGCUGGUacgcaGCCGACGa -3'
miRNA:   3'- -GCCGCU----ACA-------------GCGACCGcua--UGGCUGC- -5'
19775 5' -56.3 NC_004687.1 + 115242 0.66 0.910883
Target:  5'- uGGgGAUGgCGCcGGgGGUGCgGugGg -3'
miRNA:   3'- gCCgCUACaGCGaCCgCUAUGgCugC- -5'
19775 5' -56.3 NC_004687.1 + 129097 0.66 0.910883
Target:  5'- uCGGgGGUGuaaaccUCGUUGGUGAccgguCCGGCGc -3'
miRNA:   3'- -GCCgCUAC------AGCGACCGCUau---GGCUGC- -5'
19775 5' -56.3 NC_004687.1 + 36175 0.66 0.910293
Target:  5'- aGGCG-UGUuuccagccguugcCGCcgGGCGucauGUACCGGCGg -3'
miRNA:   3'- gCCGCuACA-------------GCGa-CCGC----UAUGGCUGC- -5'
19775 5' -56.3 NC_004687.1 + 50632 0.66 0.904872
Target:  5'- aCGGCGAcgUGuUCGCUccguacaccGGCGAaGCgGGCa -3'
miRNA:   3'- -GCCGCU--AC-AGCGA---------CCGCUaUGgCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.