miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19776 3' -55.6 NC_004687.1 + 42686 0.66 0.929749
Target:  5'- --cGCUUcGGUGagcGCCugGGagGCCUCCUg -3'
miRNA:   3'- gcaCGAA-CCAU---CGGugCUg-UGGAGGA- -5'
19776 3' -55.6 NC_004687.1 + 61878 0.66 0.929749
Target:  5'- --cGCUcGGgcGCuCACuuggGGCGCCUCCUa -3'
miRNA:   3'- gcaCGAaCCauCG-GUG----CUGUGGAGGA- -5'
19776 3' -55.6 NC_004687.1 + 140442 0.66 0.929749
Target:  5'- gGUGCUUGcUGGuCCACaGGCGCUUgCCg -3'
miRNA:   3'- gCACGAACcAUC-GGUG-CUGUGGA-GGa -5'
19776 3' -55.6 NC_004687.1 + 139513 0.66 0.929749
Target:  5'- gGUGCgcagaugGGUGGUgGCGAC-CUUCUUg -3'
miRNA:   3'- gCACGaa-----CCAUCGgUGCUGuGGAGGA- -5'
19776 3' -55.6 NC_004687.1 + 32097 0.66 0.92442
Target:  5'- gCGUGCgcgcggaaGGUGGCCAgGGC-CCUggCCa -3'
miRNA:   3'- -GCACGaa------CCAUCGGUgCUGuGGA--GGa -5'
19776 3' -55.6 NC_004687.1 + 132342 0.66 0.91304
Target:  5'- --cGCgugUGGUGGCCGauCGGCGCCgcaagaucaUCCg -3'
miRNA:   3'- gcaCGa--ACCAUCGGU--GCUGUGG---------AGGa -5'
19776 3' -55.6 NC_004687.1 + 56949 0.66 0.906992
Target:  5'- cCG-GCUUGGccgGGCCACGA-GCCUUg- -3'
miRNA:   3'- -GCaCGAACCa--UCGGUGCUgUGGAGga -5'
19776 3' -55.6 NC_004687.1 + 120497 0.66 0.900707
Target:  5'- --cGCUUGGUcaGGCCgaacugcuugGCGAUGCCUgCCg -3'
miRNA:   3'- gcaCGAACCA--UCGG----------UGCUGUGGA-GGa -5'
19776 3' -55.6 NC_004687.1 + 141142 0.66 0.900707
Target:  5'- uGUGaggaUUGGUGGCCugGAC-CUUgCg -3'
miRNA:   3'- gCACg---AACCAUCGGugCUGuGGAgGa -5'
19776 3' -55.6 NC_004687.1 + 134429 0.66 0.900707
Target:  5'- gGUGCg----GGCgGCGAgCACCUCCa -3'
miRNA:   3'- gCACGaaccaUCGgUGCU-GUGGAGGa -5'
19776 3' -55.6 NC_004687.1 + 85408 0.66 0.900707
Target:  5'- gCGaUGCg-GGUGGCCgACGGCACCggcgugaccgaUCCg -3'
miRNA:   3'- -GC-ACGaaCCAUCGG-UGCUGUGG-----------AGGa -5'
19776 3' -55.6 NC_004687.1 + 91632 0.66 0.900707
Target:  5'- --cGCUgggGGUGGCCAUcACACCcuugCCg -3'
miRNA:   3'- gcaCGAa--CCAUCGGUGcUGUGGa---GGa -5'
19776 3' -55.6 NC_004687.1 + 118977 0.67 0.894188
Target:  5'- --aGCUUGGccgagcGGCCAcCGGCgaaGCCUCCg -3'
miRNA:   3'- gcaCGAACCa-----UCGGU-GCUG---UGGAGGa -5'
19776 3' -55.6 NC_004687.1 + 32143 0.67 0.894188
Target:  5'- gGUGCcggUGGUcGCCGuCGGCACCcgacCCa -3'
miRNA:   3'- gCACGa--ACCAuCGGU-GCUGUGGa---GGa -5'
19776 3' -55.6 NC_004687.1 + 134110 0.67 0.880461
Target:  5'- gGUGCUcgUGGUcGUCgACGACGCCagcgaUCCg -3'
miRNA:   3'- gCACGA--ACCAuCGG-UGCUGUGG-----AGGa -5'
19776 3' -55.6 NC_004687.1 + 9180 0.67 0.880461
Target:  5'- --cGCUUGGgGGCCAUGcuCAgCUCCg -3'
miRNA:   3'- gcaCGAACCaUCGGUGCu-GUgGAGGa -5'
19776 3' -55.6 NC_004687.1 + 106855 0.67 0.880461
Target:  5'- cCGUGCUgccgGGaugacGGUCGCGAC-CUUCCa -3'
miRNA:   3'- -GCACGAa---CCa----UCGGUGCUGuGGAGGa -5'
19776 3' -55.6 NC_004687.1 + 112234 0.67 0.873262
Target:  5'- gGUGCcgUGGUcGCCGuCGACACUggcguagaUCCg -3'
miRNA:   3'- gCACGa-ACCAuCGGU-GCUGUGG--------AGGa -5'
19776 3' -55.6 NC_004687.1 + 136742 0.67 0.858216
Target:  5'- cCGUGCUgcUGGgcGCUggcgaACGACugCUCg- -3'
miRNA:   3'- -GCACGA--ACCauCGG-----UGCUGugGAGga -5'
19776 3' -55.6 NC_004687.1 + 118668 0.68 0.850382
Target:  5'- --aGCUcGGcGGCgGCGGCGCCUCgCUg -3'
miRNA:   3'- gcaCGAaCCaUCGgUGCUGUGGAG-GA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.