miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19776 5' -56.2 NC_004687.1 + 25489 0.66 0.919574
Target:  5'- --cGGCGGcgaucggCGUCuucaaccaguggGUGGUCGCC-CAGg -3'
miRNA:   3'- gauCCGCCa------GCAG------------CACCAGUGGuGUC- -5'
19776 5' -56.2 NC_004687.1 + 113090 0.66 0.919574
Target:  5'- --uGGUGGUgGUgG-GGUCGCCGUAGg -3'
miRNA:   3'- gauCCGCCAgCAgCaCCAGUGGUGUC- -5'
19776 5' -56.2 NC_004687.1 + 72506 0.66 0.919574
Target:  5'- -cAGGCGuacuugaCGUCGgcGGUCACCgGCAGg -3'
miRNA:   3'- gaUCCGCca-----GCAGCa-CCAGUGG-UGUC- -5'
19776 5' -56.2 NC_004687.1 + 117740 0.66 0.919574
Target:  5'- -cAGGUGGUCGaCGaGGUCcuugACCugAGc -3'
miRNA:   3'- gaUCCGCCAGCaGCaCCAG----UGGugUC- -5'
19776 5' -56.2 NC_004687.1 + 4834 0.66 0.919574
Target:  5'- -gAGGUGGUgCGUCc-GGUCACCGuCGa -3'
miRNA:   3'- gaUCCGCCA-GCAGcaCCAGUGGU-GUc -5'
19776 5' -56.2 NC_004687.1 + 131293 0.66 0.913874
Target:  5'- -cGGGCGcGUUGgccaUGGUCAUCGCGGc -3'
miRNA:   3'- gaUCCGC-CAGCagc-ACCAGUGGUGUC- -5'
19776 5' -56.2 NC_004687.1 + 66643 0.66 0.913874
Target:  5'- gCUGGGUGGUCGUCGg---C-CCGCu- -3'
miRNA:   3'- -GAUCCGCCAGCAGCaccaGuGGUGuc -5'
19776 5' -56.2 NC_004687.1 + 16325 0.66 0.913874
Target:  5'- uCUGGGCGGUCGgcacGGU-GCCGCuGa -3'
miRNA:   3'- -GAUCCGCCAGCagcaCCAgUGGUGuC- -5'
19776 5' -56.2 NC_004687.1 + 140415 0.66 0.907941
Target:  5'- -aGGGCaccGcCGUCGUGGUgACCAgCGGc -3'
miRNA:   3'- gaUCCGc--CaGCAGCACCAgUGGU-GUC- -5'
19776 5' -56.2 NC_004687.1 + 153420 0.66 0.907941
Target:  5'- aCUGGGCGGg---CGUGGUUccucaguacgGCCuGCAGa -3'
miRNA:   3'- -GAUCCGCCagcaGCACCAG----------UGG-UGUC- -5'
19776 5' -56.2 NC_004687.1 + 132757 0.66 0.907941
Target:  5'- --cGGCGcuGUCGgUGaUGGUCACCACGc -3'
miRNA:   3'- gauCCGC--CAGCaGC-ACCAGUGGUGUc -5'
19776 5' -56.2 NC_004687.1 + 29825 0.66 0.901777
Target:  5'- uUGGGCGG--GUUGUGGaCAUgGCAGa -3'
miRNA:   3'- gAUCCGCCagCAGCACCaGUGgUGUC- -5'
19776 5' -56.2 NC_004687.1 + 60630 0.66 0.895386
Target:  5'- -aGGGCGG-CGUCaaGGUgGCCGuCGGg -3'
miRNA:   3'- gaUCCGCCaGCAGcaCCAgUGGU-GUC- -5'
19776 5' -56.2 NC_004687.1 + 38872 0.67 0.888768
Target:  5'- -gAGGUGGUCGcCGaggcgcagGGUCACUAUg- -3'
miRNA:   3'- gaUCCGCCAGCaGCa-------CCAGUGGUGuc -5'
19776 5' -56.2 NC_004687.1 + 100967 0.67 0.888768
Target:  5'- gCUGGGCGGcuucaugCGUCaUGGU--CCACAGc -3'
miRNA:   3'- -GAUCCGCCa------GCAGcACCAguGGUGUC- -5'
19776 5' -56.2 NC_004687.1 + 7954 0.67 0.888768
Target:  5'- --cGGCGGcUCGUCGUccggcuacGG-CAUCACGGc -3'
miRNA:   3'- gauCCGCC-AGCAGCA--------CCaGUGGUGUC- -5'
19776 5' -56.2 NC_004687.1 + 81799 0.67 0.874873
Target:  5'- --uGGUGGgcucugagcgCGUCGUGG-CGCCACu- -3'
miRNA:   3'- gauCCGCCa---------GCAGCACCaGUGGUGuc -5'
19776 5' -56.2 NC_004687.1 + 40910 0.67 0.852448
Target:  5'- --uGGCGGaccUCGUUGUugcuGGUCGCCguggGCAGg -3'
miRNA:   3'- gauCCGCC---AGCAGCA----CCAGUGG----UGUC- -5'
19776 5' -56.2 NC_004687.1 + 144657 0.68 0.844574
Target:  5'- aCUGGGCGGg---UGUGG-CGCUGCGGa -3'
miRNA:   3'- -GAUCCGCCagcaGCACCaGUGGUGUC- -5'
19776 5' -56.2 NC_004687.1 + 75872 0.68 0.836511
Target:  5'- cCUAcGGCGGUCGg-GUGGUCcaGCUGCuGg -3'
miRNA:   3'- -GAU-CCGCCAGCagCACCAG--UGGUGuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.