miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19776 5' -56.2 NC_004687.1 + 109627 1.09 0.003033
Target:  5'- uCUAGGCGGUCGUCGUGGUCACCACAGg -3'
miRNA:   3'- -GAUCCGCCAGCAGCACCAGUGGUGUC- -5'
19776 5' -56.2 NC_004687.1 + 106509 0.74 0.517951
Target:  5'- uUGGGgGuGUCGUCgGUGGgagcCACCACGGa -3'
miRNA:   3'- gAUCCgC-CAGCAG-CACCa---GUGGUGUC- -5'
19776 5' -56.2 NC_004687.1 + 69499 0.73 0.577196
Target:  5'- -gAGGCGGUCGg---GG-CGCCACAGc -3'
miRNA:   3'- gaUCCGCCAGCagcaCCaGUGGUGUC- -5'
19776 5' -56.2 NC_004687.1 + 5651 0.72 0.627665
Target:  5'- ---uGCGGUUGUCGUcGUCGCCGCGc -3'
miRNA:   3'- gaucCGCCAGCAGCAcCAGUGGUGUc -5'
19776 5' -56.2 NC_004687.1 + 88712 0.71 0.692237
Target:  5'- -cGGGCGGUgGUCGggGGUCcagcccucgacgcgcACCACGa -3'
miRNA:   3'- gaUCCGCCAgCAGCa-CCAG---------------UGGUGUc -5'
19776 5' -56.2 NC_004687.1 + 145345 0.7 0.708152
Target:  5'- -aAGGCGGUCG-CGgccuuuGUCGCCGCGc -3'
miRNA:   3'- gaUCCGCCAGCaGCac----CAGUGGUGUc -5'
19776 5' -56.2 NC_004687.1 + 95823 0.7 0.736561
Target:  5'- --cGGCGGUUcaaGUCGUGGUCaaugucgACgACAGa -3'
miRNA:   3'- gauCCGCCAG---CAGCACCAG-------UGgUGUC- -5'
19776 5' -56.2 NC_004687.1 + 61567 0.7 0.737528
Target:  5'- -gGGGCGGUaggugcaGUCGUGGUgcUCGCGGu -3'
miRNA:   3'- gaUCCGCCAg------CAGCACCAguGGUGUC- -5'
19776 5' -56.2 NC_004687.1 + 74869 0.69 0.793612
Target:  5'- --cGGCGaucUUGUCgGUGGUCACCGcCAGg -3'
miRNA:   3'- gauCCGCc--AGCAG-CACCAGUGGU-GUC- -5'
19776 5' -56.2 NC_004687.1 + 147276 0.69 0.80251
Target:  5'- -gGGGCGuGUUGUCGUcGGUCugCGgGu -3'
miRNA:   3'- gaUCCGC-CAGCAGCA-CCAGugGUgUc -5'
19776 5' -56.2 NC_004687.1 + 23157 0.68 0.819845
Target:  5'- ---aGCGGUCG-CGUGGUgACCAUc- -3'
miRNA:   3'- gaucCGCCAGCaGCACCAgUGGUGuc -5'
19776 5' -56.2 NC_004687.1 + 142670 0.68 0.828265
Target:  5'- gCUGacCGGUaacCG-CGUGGUCACCACGGu -3'
miRNA:   3'- -GAUccGCCA---GCaGCACCAGUGGUGUC- -5'
19776 5' -56.2 NC_004687.1 + 132406 0.68 0.836511
Target:  5'- --cGGUGGUCGUCGgcgGGUU-CUugAGg -3'
miRNA:   3'- gauCCGCCAGCAGCa--CCAGuGGugUC- -5'
19776 5' -56.2 NC_004687.1 + 152940 0.68 0.836511
Target:  5'- ----cCGGacaaUCGUCGUGGUCGCCAuCGGc -3'
miRNA:   3'- gauccGCC----AGCAGCACCAGUGGU-GUC- -5'
19776 5' -56.2 NC_004687.1 + 82323 0.68 0.836511
Target:  5'- --uGGCGGUCGUCcagGGUCggGCCaagcuggaGCAGg -3'
miRNA:   3'- gauCCGCCAGCAGca-CCAG--UGG--------UGUC- -5'
19776 5' -56.2 NC_004687.1 + 75872 0.68 0.836511
Target:  5'- cCUAcGGCGGUCGg-GUGGUCcaGCUGCuGg -3'
miRNA:   3'- -GAU-CCGCCAGCagCACCAG--UGGUGuC- -5'
19776 5' -56.2 NC_004687.1 + 144657 0.68 0.844574
Target:  5'- aCUGGGCGGg---UGUGG-CGCUGCGGa -3'
miRNA:   3'- -GAUCCGCCagcaGCACCaGUGGUGUC- -5'
19776 5' -56.2 NC_004687.1 + 40910 0.67 0.852448
Target:  5'- --uGGCGGaccUCGUUGUugcuGGUCGCCguggGCAGg -3'
miRNA:   3'- gauCCGCC---AGCAGCA----CCAGUGG----UGUC- -5'
19776 5' -56.2 NC_004687.1 + 81799 0.67 0.874873
Target:  5'- --uGGUGGgcucugagcgCGUCGUGG-CGCCACu- -3'
miRNA:   3'- gauCCGCCa---------GCAGCACCaGUGGUGuc -5'
19776 5' -56.2 NC_004687.1 + 100967 0.67 0.888768
Target:  5'- gCUGGGCGGcuucaugCGUCaUGGU--CCACAGc -3'
miRNA:   3'- -GAUCCGCCa------GCAGcACCAguGGUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.