miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19779 5' -60.6 NC_004687.1 + 104421 0.66 0.741532
Target:  5'- gGCGCgaGuCCUccUGGCgCAUgaUGGCCUGCu -3'
miRNA:   3'- -CGUGg-C-GGA--ACCG-GUGgaACCGGGCG- -5'
19779 5' -60.6 NC_004687.1 + 77476 0.66 0.741532
Target:  5'- cCGCCGCCUccUGuGCgGCgUagcGGCCCGg -3'
miRNA:   3'- cGUGGCGGA--AC-CGgUGgAa--CCGGGCg -5'
19779 5' -60.6 NC_004687.1 + 51377 0.66 0.741532
Target:  5'- cGCuucCCGCCU--GCCgACCUgggUGGCCagCGCg -3'
miRNA:   3'- -CGu--GGCGGAacCGG-UGGA---ACCGG--GCG- -5'
19779 5' -60.6 NC_004687.1 + 3087 0.66 0.741532
Target:  5'- aGCACCagGCCUggagacgGcGUCAUCcccauuggUGGCCCGUa -3'
miRNA:   3'- -CGUGG--CGGAa------C-CGGUGGa-------ACCGGGCG- -5'
19779 5' -60.6 NC_004687.1 + 145364 0.66 0.741532
Target:  5'- uCGCCGCgCUgggcggcaUGGCCGCUguguugcUGGCCgaCGCc -3'
miRNA:   3'- cGUGGCG-GA--------ACCGGUGGa------ACCGG--GCG- -5'
19779 5' -60.6 NC_004687.1 + 154933 0.66 0.741532
Target:  5'- cGCACCGgUggucgcgGGCU-CCUggGGCCCGa -3'
miRNA:   3'- -CGUGGCgGaa-----CCGGuGGAa-CCGGGCg -5'
19779 5' -60.6 NC_004687.1 + 120546 0.66 0.741532
Target:  5'- uGCGCCGCgCguggcUGGCCugCUgcugcaggcuguUGGCgCCa- -3'
miRNA:   3'- -CGUGGCG-Ga----ACCGGugGA------------ACCG-GGcg -5'
19779 5' -60.6 NC_004687.1 + 107078 0.66 0.741532
Target:  5'- cGCugCaGCCUggacccgcUGGCCuacgccgaggACCUccUGGCCCa- -3'
miRNA:   3'- -CGugG-CGGA--------ACCGG----------UGGA--ACCGGGcg -5'
19779 5' -60.6 NC_004687.1 + 50667 0.66 0.741532
Target:  5'- gGCACCGugcCCUUcGGCCugUc-GGCCCu- -3'
miRNA:   3'- -CGUGGC---GGAA-CCGGugGaaCCGGGcg -5'
19779 5' -60.6 NC_004687.1 + 38173 0.66 0.741532
Target:  5'- aGCgACUGCCagauccgaucGGCCACCUugcgGGUgCCGCc -3'
miRNA:   3'- -CG-UGGCGGaa--------CCGGUGGAa---CCG-GGCG- -5'
19779 5' -60.6 NC_004687.1 + 2774 0.66 0.735856
Target:  5'- uCACCGCCUgcucguugaguagcuUGcGCCACgaUGGCa-GCa -3'
miRNA:   3'- cGUGGCGGA---------------AC-CGGUGgaACCGggCG- -5'
19779 5' -60.6 NC_004687.1 + 31426 0.66 0.732055
Target:  5'- aCACCGCCggGGCCAauaagucGGCucauCCGCc -3'
miRNA:   3'- cGUGGCGGaaCCGGUggaa---CCG----GGCG- -5'
19779 5' -60.6 NC_004687.1 + 82351 0.66 0.732055
Target:  5'- cGCgAUCGCCUccugcucggUGGCCauggcacucaugGCCUUGGUgaGCu -3'
miRNA:   3'- -CG-UGGCGGA---------ACCGG------------UGGAACCGggCG- -5'
19779 5' -60.6 NC_004687.1 + 76844 0.66 0.732055
Target:  5'- cGCGCCGCC---GCUgaaaGCCUUGGUCgGg -3'
miRNA:   3'- -CGUGGCGGaacCGG----UGGAACCGGgCg -5'
19779 5' -60.6 NC_004687.1 + 151473 0.66 0.732055
Target:  5'- aGCAUCGCCagucgcgacGGCCugCacaUGGUuaCCGCa -3'
miRNA:   3'- -CGUGGCGGaa-------CCGGugGa--ACCG--GGCG- -5'
19779 5' -60.6 NC_004687.1 + 63040 0.66 0.732055
Target:  5'- cCGCCagagGCCUUGGCCAUgcUGGCggUCGUc -3'
miRNA:   3'- cGUGG----CGGAACCGGUGgaACCG--GGCG- -5'
19779 5' -60.6 NC_004687.1 + 140591 0.66 0.732055
Target:  5'- cGCGCCGCUgUGGUCuCCggUGGCggugUGCa -3'
miRNA:   3'- -CGUGGCGGaACCGGuGGa-ACCGg---GCG- -5'
19779 5' -60.6 NC_004687.1 + 142186 0.66 0.732055
Target:  5'- gGC-CUGCUccagGGCCuuCUUGGCCUGa -3'
miRNA:   3'- -CGuGGCGGaa--CCGGugGAACCGGGCg -5'
19779 5' -60.6 NC_004687.1 + 80840 0.66 0.732055
Target:  5'- -gAUCGUCUcGGCCACCggcggUGGUgCGg -3'
miRNA:   3'- cgUGGCGGAaCCGGUGGa----ACCGgGCg -5'
19779 5' -60.6 NC_004687.1 + 107248 0.66 0.732055
Target:  5'- -gGgCGCCUcGGUCucGCCguaGGCCUGCa -3'
miRNA:   3'- cgUgGCGGAaCCGG--UGGaa-CCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.