miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19783 3' -52.4 NC_004687.1 + 5550 0.66 0.983946
Target:  5'- gGCUgACCcACUGCGgGCUGGAAGcugacGUCc -3'
miRNA:   3'- gCGA-UGGcUGACGU-UGACCUUCu----CAG- -5'
19783 3' -52.4 NC_004687.1 + 91073 0.66 0.983946
Target:  5'- aGCUGCCaGGCcGCGuuGCUGGuguAGuaGGUCg -3'
miRNA:   3'- gCGAUGG-CUGaCGU--UGACCu--UC--UCAG- -5'
19783 3' -52.4 NC_004687.1 + 109869 0.66 0.981961
Target:  5'- gGCU-CCGgcGCUGCG-CUGGAAGGccgcgacgauGUCg -3'
miRNA:   3'- gCGAuGGC--UGACGUuGACCUUCU----------CAG- -5'
19783 3' -52.4 NC_004687.1 + 18991 0.66 0.979798
Target:  5'- -cCUGCgCGACUGCAucgaaggcgagcGCUGGGAcGAGg- -3'
miRNA:   3'- gcGAUG-GCUGACGU------------UGACCUU-CUCag -5'
19783 3' -52.4 NC_004687.1 + 154204 0.66 0.977448
Target:  5'- aCGCUGCCGAUgugGCGggucGCagGGAGGAc-- -3'
miRNA:   3'- -GCGAUGGCUGa--CGU----UGa-CCUUCUcag -5'
19783 3' -52.4 NC_004687.1 + 152267 0.66 0.974902
Target:  5'- gCGCUGCUcaaggaguuuGACgaGCuGCUGGAGG-GUCu -3'
miRNA:   3'- -GCGAUGG----------CUGa-CGuUGACCUUCuCAG- -5'
19783 3' -52.4 NC_004687.1 + 12207 0.66 0.974902
Target:  5'- gCGCUgggaccagACCGGCgaGUGGCUGGAGGAc-- -3'
miRNA:   3'- -GCGA--------UGGCUGa-CGUUGACCUUCUcag -5'
19783 3' -52.4 NC_004687.1 + 49912 0.66 0.974902
Target:  5'- aGCgUGCCGACgagaAGCUGGA--AGUCg -3'
miRNA:   3'- gCG-AUGGCUGacg-UUGACCUucUCAG- -5'
19783 3' -52.4 NC_004687.1 + 92634 0.66 0.974636
Target:  5'- uCGCUcuucuguACCGGCUGCAugcugaucacCUGGu-GGGUCc -3'
miRNA:   3'- -GCGA-------UGGCUGACGUu---------GACCuuCUCAG- -5'
19783 3' -52.4 NC_004687.1 + 27800 0.66 0.971288
Target:  5'- gCGCUGCuCGACcaccgGCGGCUugggcgccucugccGGAggcGGGGUCg -3'
miRNA:   3'- -GCGAUG-GCUGa----CGUUGA--------------CCU---UCUCAG- -5'
19783 3' -52.4 NC_004687.1 + 139433 0.67 0.969193
Target:  5'- cCGCcACCGAUgcgguUGCGgguCUGGggGAcgGUCa -3'
miRNA:   3'- -GCGaUGGCUG-----ACGUu--GACCuuCU--CAG- -5'
19783 3' -52.4 NC_004687.1 + 1834 0.67 0.966016
Target:  5'- aCGCUGCCGAaucgaaCUGC--CUGGAacAGGGcCa -3'
miRNA:   3'- -GCGAUGGCU------GACGuuGACCU--UCUCaG- -5'
19783 3' -52.4 NC_004687.1 + 81100 0.67 0.966016
Target:  5'- aGCUcGCCGAggaugUGCAGCUGGcacucgacGAGUCg -3'
miRNA:   3'- gCGA-UGGCUg----ACGUUGACCuu------CUCAG- -5'
19783 3' -52.4 NC_004687.1 + 6595 0.67 0.966016
Target:  5'- uGCUGCCGACcagGCgGACUGGGAu---- -3'
miRNA:   3'- gCGAUGGCUGa--CG-UUGACCUUcucag -5'
19783 3' -52.4 NC_004687.1 + 103813 0.67 0.962615
Target:  5'- cCGC-ACCGugUGCuugUGGGAGGGg- -3'
miRNA:   3'- -GCGaUGGCugACGuugACCUUCUCag -5'
19783 3' -52.4 NC_004687.1 + 155005 0.67 0.962615
Target:  5'- gCGCUgGCCGGuCUGCcuGCUcaGGAAGuGUCc -3'
miRNA:   3'- -GCGA-UGGCU-GACGu-UGA--CCUUCuCAG- -5'
19783 3' -52.4 NC_004687.1 + 140673 0.67 0.958983
Target:  5'- aCGCUGCCGACgUGCccGCcGGAucgacGGUCg -3'
miRNA:   3'- -GCGAUGGCUG-ACGu-UGaCCUuc---UCAG- -5'
19783 3' -52.4 NC_004687.1 + 58264 0.67 0.958983
Target:  5'- aCGCUGCCGACaccgGCucGCUGGAGc---- -3'
miRNA:   3'- -GCGAUGGCUGa---CGu-UGACCUUcucag -5'
19783 3' -52.4 NC_004687.1 + 77281 0.67 0.955117
Target:  5'- cCGCUGCCGAgggaCUGCcgUUGGu--GGUCg -3'
miRNA:   3'- -GCGAUGGCU----GACGuuGACCuucUCAG- -5'
19783 3' -52.4 NC_004687.1 + 34424 0.68 0.95101
Target:  5'- cCGCaagGCCGAgUGCGagugugaggacgACgacaaGGAAGAGUCc -3'
miRNA:   3'- -GCGa--UGGCUgACGU------------UGa----CCUUCUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.