miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19783 5' -64.1 NC_004687.1 + 52327 0.65 0.577182
Target:  5'- gUGCCgauacgcggUCUCgGCCAGcACCACCaaggccuccagugGCCGGUg -3'
miRNA:   3'- gACGG---------AGGG-CGGUC-UGGUGG-------------CGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 22716 0.66 0.568557
Target:  5'- cCUGCCgaucugCUCGCCcugcuGGCCGCUGUCGa- -3'
miRNA:   3'- -GACGGa-----GGGCGGu----CUGGUGGCGGCca -5'
19783 5' -64.1 NC_004687.1 + 37766 0.66 0.568557
Target:  5'- aUGCCUaagaUCCGCCAG-CCGCugggcaCGCUGGc -3'
miRNA:   3'- gACGGA----GGGCGGUCuGGUG------GCGGCCa -5'
19783 5' -64.1 NC_004687.1 + 44343 0.66 0.5676
Target:  5'- -cGCCUCgcaguugaCCGCCGGAgugcacuuccgcaCCGCCGCCccgaagcccgaGGUg -3'
miRNA:   3'- gaCGGAG--------GGCGGUCU-------------GGUGGCGG-----------CCA- -5'
19783 5' -64.1 NC_004687.1 + 6417 0.66 0.559011
Target:  5'- -cGaCCUCCuUGCgCAGuugguCCAcCCGCCGGUa -3'
miRNA:   3'- gaC-GGAGG-GCG-GUCu----GGU-GGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 74280 0.66 0.559011
Target:  5'- -cGCCUCCa-CCAccGCCGCCGCCGc- -3'
miRNA:   3'- gaCGGAGGgcGGUc-UGGUGGCGGCca -5'
19783 5' -64.1 NC_004687.1 + 33262 0.66 0.559011
Target:  5'- -cGaCUCCCGCCAGAgacaCGCCG-UGGUa -3'
miRNA:   3'- gaCgGAGGGCGGUCUg---GUGGCgGCCA- -5'
19783 5' -64.1 NC_004687.1 + 66777 0.66 0.559011
Target:  5'- -cGCaCUCCCGCgaagUAGGCgAUCGCCGcGUc -3'
miRNA:   3'- gaCG-GAGGGCG----GUCUGgUGGCGGC-CA- -5'
19783 5' -64.1 NC_004687.1 + 28182 0.66 0.559011
Target:  5'- -gGCCUUgCCGUCGG-CC-UCGCCGGUc -3'
miRNA:   3'- gaCGGAG-GGCGGUCuGGuGGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 36661 0.66 0.549512
Target:  5'- -gGCUggacCCCGCCGGACCAgCGCgacgucgacUGGg -3'
miRNA:   3'- gaCGGa---GGGCGGUCUGGUgGCG---------GCCa -5'
19783 5' -64.1 NC_004687.1 + 151729 0.66 0.549512
Target:  5'- cCUGCaCUCggaggggcgCCGCCGGGCCAacgugaCGCCGu- -3'
miRNA:   3'- -GACG-GAG---------GGCGGUCUGGUg-----GCGGCca -5'
19783 5' -64.1 NC_004687.1 + 1007 0.66 0.549512
Target:  5'- aUGCCUCCCGaCCcgagcuggucgAGGCCuacggaugggacACCaagGCCGGUu -3'
miRNA:   3'- gACGGAGGGC-GG-----------UCUGG------------UGG---CGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 113418 0.66 0.549512
Target:  5'- -cGCUcaUCCCGCCuaa-CACCGCCGa- -3'
miRNA:   3'- gaCGG--AGGGCGGucugGUGGCGGCca -5'
19783 5' -64.1 NC_004687.1 + 72604 0.66 0.549512
Target:  5'- -cGC--CCCGCCGGAgCC-CCGCCGaGUa -3'
miRNA:   3'- gaCGgaGGGCGGUCU-GGuGGCGGC-CA- -5'
19783 5' -64.1 NC_004687.1 + 42707 0.66 0.549512
Target:  5'- -gGCCUCCUGUUGGGCguCCaGCUGGc -3'
miRNA:   3'- gaCGGAGGGCGGUCUGguGG-CGGCCa -5'
19783 5' -64.1 NC_004687.1 + 26070 0.66 0.548564
Target:  5'- -cGCCUUcacuggagacgaUCGCCacgauguggcuggAGACCgACCGCCGGa -3'
miRNA:   3'- gaCGGAG------------GGCGG-------------UCUGG-UGGCGGCCa -5'
19783 5' -64.1 NC_004687.1 + 111332 0.66 0.543836
Target:  5'- aCUGCCguagcCCCGCUGGuCCggccccagcgcggcgACCGCaCGGUc -3'
miRNA:   3'- -GACGGa----GGGCGGUCuGG---------------UGGCG-GCCA- -5'
19783 5' -64.1 NC_004687.1 + 50963 0.66 0.540063
Target:  5'- -cGCCUCaaCCGCCucGACCuggcggcgACCGgCGGUg -3'
miRNA:   3'- gaCGGAG--GGCGGu-CUGG--------UGGCgGCCA- -5'
19783 5' -64.1 NC_004687.1 + 118494 0.66 0.540063
Target:  5'- gUGCCUucUCUGCCAgGACCACuuugaaCGUCGGa -3'
miRNA:   3'- gACGGA--GGGCGGU-CUGGUG------GCGGCCa -5'
19783 5' -64.1 NC_004687.1 + 27789 0.66 0.540063
Target:  5'- -aGCCagCCCGCgCGcugcucGACCACCGgCGGc -3'
miRNA:   3'- gaCGGa-GGGCG-GU------CUGGUGGCgGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.