miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19783 5' -64.1 NC_004687.1 + 104931 1.06 0.000956
Target:  5'- gCUGCCUCCCGCCAGACCACCGCCGGUc -3'
miRNA:   3'- -GACGGAGGGCGGUCUGGUGGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 82145 0.74 0.174205
Target:  5'- cCUGCCggugCcgccgucgaguagCCGCCGGGCCcgcuGCCGCCGGUc -3'
miRNA:   3'- -GACGGa---G-------------GGCGGUCUGG----UGGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 85193 0.74 0.178845
Target:  5'- -cGCCgUCgCGCUGGACCuCCGCCGGg -3'
miRNA:   3'- gaCGG-AGgGCGGUCUGGuGGCGGCCa -5'
19783 5' -64.1 NC_004687.1 + 39483 0.74 0.178845
Target:  5'- gCUGCCgguggCCCGCCc--CCGcCCGCCGGUg -3'
miRNA:   3'- -GACGGa----GGGCGGucuGGU-GGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 146913 0.74 0.183158
Target:  5'- gCUGCC-CCCagugucaccgccGCCAGcGCCACCGUCGGa -3'
miRNA:   3'- -GACGGaGGG------------CGGUC-UGGUGGCGGCCa -5'
19783 5' -64.1 NC_004687.1 + 149850 0.74 0.183158
Target:  5'- -cGUCgggCCCGCCAGAUCGCCGUCGc- -3'
miRNA:   3'- gaCGGa--GGGCGGUCUGGUGGCGGCca -5'
19783 5' -64.1 NC_004687.1 + 47901 0.74 0.191607
Target:  5'- -cGCC-CCCGCUGGACCGCCGaagaugauugcguCCGGg -3'
miRNA:   3'- gaCGGaGGGCGGUCUGGUGGC-------------GGCCa -5'
19783 5' -64.1 NC_004687.1 + 47427 0.73 0.206126
Target:  5'- aCUGCCg-CCGCCguucGGACCGCUGCCGa- -3'
miRNA:   3'- -GACGGagGGCGG----UCUGGUGGCGGCca -5'
19783 5' -64.1 NC_004687.1 + 106427 0.73 0.208067
Target:  5'- gUGCCcgagcgcgucggcgaUCCCGagaCcGGCCACCGCCGGUu -3'
miRNA:   3'- gACGG---------------AGGGCg--GuCUGGUGGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 77301 0.72 0.236391
Target:  5'- -cGCCUCCgGCCaAGACCcuggucuACuCGCCGGa -3'
miRNA:   3'- gaCGGAGGgCGG-UCUGG-------UG-GCGGCCa -5'
19783 5' -64.1 NC_004687.1 + 128105 0.72 0.236935
Target:  5'- -cGCCUCCgGCagaGGcGCCcaaGCCGCCGGUg -3'
miRNA:   3'- gaCGGAGGgCGg--UC-UGG---UGGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 110113 0.72 0.248031
Target:  5'- aUGCCgccgCCCGCC-GACgACUGUCGGg -3'
miRNA:   3'- gACGGa---GGGCGGuCUGgUGGCGGCCa -5'
19783 5' -64.1 NC_004687.1 + 81654 0.72 0.248031
Target:  5'- cCUGCCga-CGCCAGACCgagcagguuauuGCCGCCGcGUc -3'
miRNA:   3'- -GACGGaggGCGGUCUGG------------UGGCGGC-CA- -5'
19783 5' -64.1 NC_004687.1 + 53158 0.72 0.248031
Target:  5'- -gGCCaagaUCCuCGa-AGACCACCGCCGGUg -3'
miRNA:   3'- gaCGG----AGG-GCggUCUGGUGGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 134433 0.72 0.253738
Target:  5'- gCUGCCUgcucuacuacaCCCGCaAGGCCcuggagACCGCCGGa -3'
miRNA:   3'- -GACGGA-----------GGGCGgUCUGG------UGGCGGCCa -5'
19783 5' -64.1 NC_004687.1 + 75048 0.72 0.258381
Target:  5'- gUGCCgcccucggguagCUCGUCAGugcuggccgcACCACCGCCGGUg -3'
miRNA:   3'- gACGGa-----------GGGCGGUC----------UGGUGGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 36720 0.72 0.265476
Target:  5'- -cGCCgauggCCCG-CAGGCCccgggcaagACCGCCGGUg -3'
miRNA:   3'- gaCGGa----GGGCgGUCUGG---------UGGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 151297 0.71 0.271508
Target:  5'- gCUG-CUCCCGCCAGgacACCgaggACCGCUGGc -3'
miRNA:   3'- -GACgGAGGGCGGUC---UGG----UGGCGGCCa -5'
19783 5' -64.1 NC_004687.1 + 74687 0.71 0.271508
Target:  5'- aUGCCcucuacUCCgGCCAGacgauggagcagGCCGCUGCCGGg -3'
miRNA:   3'- gACGG------AGGgCGGUC------------UGGUGGCGGCCa -5'
19783 5' -64.1 NC_004687.1 + 9778 0.71 0.289624
Target:  5'- -gGCCUugCCCGCCucgaucgaaGGACCcaugggaaauggcGCCGCCGGg -3'
miRNA:   3'- gaCGGA--GGGCGG---------UCUGG-------------UGGCGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.