miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19783 5' -64.1 NC_004687.1 + 27789 0.66 0.540063
Target:  5'- -aGCCagCCCGCgCGcugcucGACCACCGgCGGc -3'
miRNA:   3'- gaCGGa-GGGCG-GU------CUGGUGGCgGCCa -5'
19783 5' -64.1 NC_004687.1 + 118494 0.66 0.540063
Target:  5'- gUGCCUucUCUGCCAgGACCACuuugaaCGUCGGa -3'
miRNA:   3'- gACGGA--GGGCGGU-CUGGUG------GCGGCCa -5'
19783 5' -64.1 NC_004687.1 + 105608 0.66 0.530669
Target:  5'- gUGCggcCCCGCgAGuACUACCGCUGGc -3'
miRNA:   3'- gACGga-GGGCGgUC-UGGUGGCGGCCa -5'
19783 5' -64.1 NC_004687.1 + 91063 0.66 0.530669
Target:  5'- -cGCCgugagcagCUGCCAGGCCGCguUGCUGGUg -3'
miRNA:   3'- gaCGGag------GGCGGUCUGGUG--GCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 50141 0.66 0.530669
Target:  5'- -cGCCUUCCgucuggcggaaGCCAuGAUCGCUGCUGGc -3'
miRNA:   3'- gaCGGAGGG-----------CGGU-CUGGUGGCGGCCa -5'
19783 5' -64.1 NC_004687.1 + 116403 0.66 0.527862
Target:  5'- -cGCCggggccaccggaggaCCGCCcaucGGACCACCGgCGGg -3'
miRNA:   3'- gaCGGag-------------GGCGG----UCUGGUGGCgGCCa -5'
19783 5' -64.1 NC_004687.1 + 88185 0.66 0.521335
Target:  5'- gUGCggCCCGUUggugaAGACCuCUGCCGGUg -3'
miRNA:   3'- gACGgaGGGCGG-----UCUGGuGGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 9647 0.66 0.521335
Target:  5'- aUGUCgUCCUcCCAGACC-UCGCUGGUg -3'
miRNA:   3'- gACGG-AGGGcGGUCUGGuGGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 136022 0.66 0.521335
Target:  5'- uCUGCaccucgCCCGCCAGGuacagcugguCCAuauagUCGCCGGUc -3'
miRNA:   3'- -GACGga----GGGCGGUCU----------GGU-----GGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 107620 0.66 0.521335
Target:  5'- gUGCCggaCUGaccaCAGACCGgUGCCGGUc -3'
miRNA:   3'- gACGGag-GGCg---GUCUGGUgGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 139048 0.66 0.521335
Target:  5'- -aGCCgaucagCCCGCUGGA-CACCGCCa-- -3'
miRNA:   3'- gaCGGa-----GGGCGGUCUgGUGGCGGcca -5'
19783 5' -64.1 NC_004687.1 + 16855 0.66 0.521335
Target:  5'- -aGUUggCCCGCCAG-CU-CCGCCGGg -3'
miRNA:   3'- gaCGGa-GGGCGGUCuGGuGGCGGCCa -5'
19783 5' -64.1 NC_004687.1 + 18091 0.66 0.520406
Target:  5'- -cGUCgaggCCCGCCGGGCCcugACCGaguucgcCCGGg -3'
miRNA:   3'- gaCGGa---GGGCGGUCUGG---UGGC-------GGCCa -5'
19783 5' -64.1 NC_004687.1 + 97686 0.66 0.518548
Target:  5'- -cGCCUgaCGCCGGGCCuccagcucaucgucAUCGUCGGUg -3'
miRNA:   3'- gaCGGAggGCGGUCUGG--------------UGGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 37685 0.67 0.512066
Target:  5'- -cGCCgUgCCGCCgAGGCCaACCGCCa-- -3'
miRNA:   3'- gaCGG-AgGGCGG-UCUGG-UGGCGGcca -5'
19783 5' -64.1 NC_004687.1 + 24359 0.67 0.512066
Target:  5'- -cGCCguucaCCgGUCAGACCGgCGCCGa- -3'
miRNA:   3'- gaCGGa----GGgCGGUCUGGUgGCGGCca -5'
19783 5' -64.1 NC_004687.1 + 25779 0.67 0.512066
Target:  5'- uUGCC-CCCGUcgcuCAGGCCGcgcCCGCCuGGg -3'
miRNA:   3'- gACGGaGGGCG----GUCUGGU---GGCGG-CCa -5'
19783 5' -64.1 NC_004687.1 + 123779 0.67 0.511143
Target:  5'- -gGCUUCCCcgaccccGCCauccgacaGGGCCucuACCGCCGGUc -3'
miRNA:   3'- gaCGGAGGG-------CGG--------UCUGG---UGGCGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 43115 0.67 0.511143
Target:  5'- gCUGCCuuccucaUCCCGCuCAuGGgCGCCggaGCCGGUg -3'
miRNA:   3'- -GACGG-------AGGGCG-GU-CUgGUGG---CGGCCA- -5'
19783 5' -64.1 NC_004687.1 + 111848 0.67 0.502866
Target:  5'- -cGCCUgggCCUGgCGGGCCAa-GCCGGUg -3'
miRNA:   3'- gaCGGA---GGGCgGUCUGGUggCGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.