miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1979 5' -49.9 NC_001347.2 + 187600 0.66 0.999636
Target:  5'- gCGCAUUGAAGAAAaccuGGAgGGuUGCGCc -3'
miRNA:   3'- -GUGUAGCUUCUUU----UCUgCUcGCGCGc -5'
1979 5' -49.9 NC_001347.2 + 39502 0.66 0.999636
Target:  5'- gGCcgCGAccAAGGGGCgGGGgGCGCGg -3'
miRNA:   3'- gUGuaGCUucUUUUCUG-CUCgCGCGC- -5'
1979 5' -49.9 NC_001347.2 + 156371 0.66 0.999619
Target:  5'- aACAUCGAgcucaucgccuucGGAcccgaaaacGAGGGCGAGUacgagaaucugcuGCGCGa -3'
miRNA:   3'- gUGUAGCU-------------UCU---------UUUCUGCUCG-------------CGCGC- -5'
1979 5' -49.9 NC_001347.2 + 168971 0.66 0.999547
Target:  5'- gAguUCGAGGcgcAGcCGGGCGCGCu -3'
miRNA:   3'- gUguAGCUUCuuuUCuGCUCGCGCGc -5'
1979 5' -49.9 NC_001347.2 + 171230 0.66 0.999547
Target:  5'- gCACGUCGGAGuu--GACGGGgGUuuGCu -3'
miRNA:   3'- -GUGUAGCUUCuuuuCUGCUCgCG--CGc -5'
1979 5' -49.9 NC_001347.2 + 206724 0.66 0.999547
Target:  5'- gACGUCGAGGu--AGAUGuuuGCgGCGCc -3'
miRNA:   3'- gUGUAGCUUCuuuUCUGCu--CG-CGCGc -5'
1979 5' -49.9 NC_001347.2 + 142573 0.66 0.999547
Target:  5'- gGCGUCGGcgggagcagcGGggGcGGCGGGgGCaGCGg -3'
miRNA:   3'- gUGUAGCU----------UCuuUuCUGCUCgCG-CGC- -5'
1979 5' -49.9 NC_001347.2 + 155867 0.66 0.999547
Target:  5'- gACAUuaaCGGaauccuggagGGAAAAGACGAGUcgGCGCc -3'
miRNA:   3'- gUGUA---GCU----------UCUUUUCUGCUCG--CGCGc -5'
1979 5' -49.9 NC_001347.2 + 110522 0.66 0.999547
Target:  5'- gCGCGgcggCGAAGAAAaucGGccGCGAauggaaGCGCGCGc -3'
miRNA:   3'- -GUGUa---GCUUCUUU---UC--UGCU------CGCGCGC- -5'
1979 5' -49.9 NC_001347.2 + 156290 0.66 0.999484
Target:  5'- gACAUCGAGGAGAucaagcccucggccuAcggagugcuGACGAaGUGCGUGg -3'
miRNA:   3'- gUGUAGCUUCUUU---------------U---------CUGCU-CGCGCGC- -5'
1979 5' -49.9 NC_001347.2 + 44476 0.66 0.999439
Target:  5'- aCGCGUUGGGuaagcGGAAAGACGuGUGUGaCGa -3'
miRNA:   3'- -GUGUAGCUU-----CUUUUCUGCuCGCGC-GC- -5'
1979 5' -49.9 NC_001347.2 + 9020 0.66 0.999439
Target:  5'- gGCA-CGggGAAAAGAgGGGCGgacaCGgGg -3'
miRNA:   3'- gUGUaGCuuCUUUUCUgCUCGC----GCgC- -5'
1979 5' -49.9 NC_001347.2 + 139460 0.66 0.999439
Target:  5'- uGCA-CGgcGgcGAGGCGGuGCGCGUGc -3'
miRNA:   3'- gUGUaGCuuCuuUUCUGCU-CGCGCGC- -5'
1979 5' -49.9 NC_001347.2 + 152012 0.66 0.999415
Target:  5'- aACAggaGAGGAGGAGAgccggcaaagaaGAGgGCGCGg -3'
miRNA:   3'- gUGUag-CUUCUUUUCUg-----------CUCgCGCGC- -5'
1979 5' -49.9 NC_001347.2 + 17305 0.66 0.999309
Target:  5'- aACGUUGAaagaagaggaGGGGAAGACGcgguuGCcGCGCGu -3'
miRNA:   3'- gUGUAGCU----------UCUUUUCUGCu----CG-CGCGC- -5'
1979 5' -49.9 NC_001347.2 + 1694 0.66 0.999155
Target:  5'- gCGCGcCGAGGAGgcGACG-GCGCuCGg -3'
miRNA:   3'- -GUGUaGCUUCUUuuCUGCuCGCGcGC- -5'
1979 5' -49.9 NC_001347.2 + 156783 0.67 0.998971
Target:  5'- gGCGggaGAAGGGAAGGCGgcAGCGgcaGCGg -3'
miRNA:   3'- gUGUag-CUUCUUUUCUGC--UCGCg--CGC- -5'
1979 5' -49.9 NC_001347.2 + 78606 0.67 0.998971
Target:  5'- uCGCGgcgCGAGGAcuccauGAGcCuGGGCGCGCGc -3'
miRNA:   3'- -GUGUa--GCUUCUu-----UUCuG-CUCGCGCGC- -5'
1979 5' -49.9 NC_001347.2 + 200177 0.67 0.998755
Target:  5'- cCGCggUGAGGAcaaGAAGACGgagcguGGUGUGCGa -3'
miRNA:   3'- -GUGuaGCUUCU---UUUCUGC------UCGCGCGC- -5'
1979 5' -49.9 NC_001347.2 + 188763 0.67 0.998755
Target:  5'- gACAUCacGGAuaccGAGACGAGCGC-Ca -3'
miRNA:   3'- gUGUAGcuUCUu---UUCUGCUCGCGcGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.