miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19791 3' -55.8 NC_004687.1 + 71702 0.66 0.920709
Target:  5'- gGGCGUAGCCauGUCGaUGCCGauUCAg -3'
miRNA:   3'- -CCGCAUCGGc-CAGUcACGGUguAGUg -5'
19791 3' -55.8 NC_004687.1 + 81307 0.66 0.920709
Target:  5'- cGGCaGUGGUCGGcaccCAG-GUCACcGUCGCg -3'
miRNA:   3'- -CCG-CAUCGGCCa---GUCaCGGUG-UAGUG- -5'
19791 3' -55.8 NC_004687.1 + 81425 0.66 0.920709
Target:  5'- gGGCacuGCCccGGUCGGcguggGCCugGUCGCc -3'
miRNA:   3'- -CCGcauCGG--CCAGUCa----CGGugUAGUG- -5'
19791 3' -55.8 NC_004687.1 + 89154 0.66 0.920709
Target:  5'- cGGCGccGCCGGgUAGaaCCGCAUCGa -3'
miRNA:   3'- -CCGCauCGGCCaGUCacGGUGUAGUg -5'
19791 3' -55.8 NC_004687.1 + 91281 0.66 0.914986
Target:  5'- cGGCGUAGa-GGUCGGcgGCUGCGUg-- -3'
miRNA:   3'- -CCGCAUCggCCAGUCa-CGGUGUAgug -5'
19791 3' -55.8 NC_004687.1 + 150158 0.66 0.914986
Target:  5'- -uCG-AGCCGGUCGGgcaGCaCGCcUCACa -3'
miRNA:   3'- ccGCaUCGGCCAGUCa--CG-GUGuAGUG- -5'
19791 3' -55.8 NC_004687.1 + 52672 0.66 0.914986
Target:  5'- gGGCGUAGCggaccUGGUCGccgGUCGCcUCGCc -3'
miRNA:   3'- -CCGCAUCG-----GCCAGUca-CGGUGuAGUG- -5'
19791 3' -55.8 NC_004687.1 + 44481 0.66 0.909025
Target:  5'- gGGUGUcGGCgGGaccccCGGUGCCGCuggCACc -3'
miRNA:   3'- -CCGCA-UCGgCCa----GUCACGGUGua-GUG- -5'
19791 3' -55.8 NC_004687.1 + 20331 0.66 0.909025
Target:  5'- cGCGUAGCUGGUCggaccgggagcgGGUGCaggaccCGCAugcguUCACc -3'
miRNA:   3'- cCGCAUCGGCCAG------------UCACG------GUGU-----AGUG- -5'
19791 3' -55.8 NC_004687.1 + 114664 0.66 0.909025
Target:  5'- gGGCc-AGCCGGUCGGcuaUGCCGgGgagUACg -3'
miRNA:   3'- -CCGcaUCGGCCAGUC---ACGGUgUa--GUG- -5'
19791 3' -55.8 NC_004687.1 + 130469 0.66 0.909025
Target:  5'- uGGUGcAGCCGGUCAccccGU-CCAUAUgGCc -3'
miRNA:   3'- -CCGCaUCGGCCAGU----CAcGGUGUAgUG- -5'
19791 3' -55.8 NC_004687.1 + 42884 0.66 0.908416
Target:  5'- cGGUGUGGCCugcucGaccuucuccucuaUCAGUcuGCCGCGUCAUa -3'
miRNA:   3'- -CCGCAUCGGc----C-------------AGUCA--CGGUGUAGUG- -5'
19791 3' -55.8 NC_004687.1 + 42784 0.66 0.905335
Target:  5'- cGGgGUGauguguggccuucucGCCGGUCGGcaaUGuCCGCGUCGu -3'
miRNA:   3'- -CCgCAU---------------CGGCCAGUC---AC-GGUGUAGUg -5'
19791 3' -55.8 NC_004687.1 + 69488 0.66 0.902827
Target:  5'- gGGUGUacaccgAGgCGGUCGGggcGCCACAgcugggcauUCGCu -3'
miRNA:   3'- -CCGCA------UCgGCCAGUCa--CGGUGU---------AGUG- -5'
19791 3' -55.8 NC_004687.1 + 76040 0.66 0.902827
Target:  5'- cGCGUGGCUGGaagcUCAacgGCUACAUCuCg -3'
miRNA:   3'- cCGCAUCGGCC----AGUca-CGGUGUAGuG- -5'
19791 3' -55.8 NC_004687.1 + 36615 0.66 0.902827
Target:  5'- aGCGUGgucuuGCCGGugcccUCGGUGCCGCcgAUCuCa -3'
miRNA:   3'- cCGCAU-----CGGCC-----AGUCACGGUG--UAGuG- -5'
19791 3' -55.8 NC_004687.1 + 142639 0.66 0.902827
Target:  5'- aGGaCGuUGGCCuccaGGUCg--GCCACGUCAUg -3'
miRNA:   3'- -CC-GC-AUCGG----CCAGucaCGGUGUAGUG- -5'
19791 3' -55.8 NC_004687.1 + 75058 0.66 0.896395
Target:  5'- cGgGUAGCUcGUCAGUgcugGCCGCAcCACc -3'
miRNA:   3'- cCgCAUCGGcCAGUCA----CGGUGUaGUG- -5'
19791 3' -55.8 NC_004687.1 + 87145 0.66 0.896395
Target:  5'- aGCGUGuGCCGGUgCGG-GUCaACGUCAg -3'
miRNA:   3'- cCGCAU-CGGCCA-GUCaCGG-UGUAGUg -5'
19791 3' -55.8 NC_004687.1 + 138469 0.67 0.889732
Target:  5'- uGGCGUAGUgGGUCc-UGgCGC-UCGCa -3'
miRNA:   3'- -CCGCAUCGgCCAGucACgGUGuAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.