miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19791 5' -55.4 NC_004687.1 + 153305 0.66 0.912056
Target:  5'- cGCGUCcaagACGcUGGCGCUGGucGGCCc-- -3'
miRNA:   3'- -CGCAG----UGCaACCGUGACUc-CCGGaac -5'
19791 5' -55.4 NC_004687.1 + 54082 0.66 0.905963
Target:  5'- aCGUCACcaugGGCGacaucGAGGGCCUg- -3'
miRNA:   3'- cGCAGUGcaa-CCGUga---CUCCCGGAac -5'
19791 5' -55.4 NC_004687.1 + 61405 0.67 0.899635
Target:  5'- --cUCGCGcaUGGC-CUGucGGGCCUUGg -3'
miRNA:   3'- cgcAGUGCa-ACCGuGACu-CCCGGAAC- -5'
19791 5' -55.4 NC_004687.1 + 41998 0.67 0.899635
Target:  5'- gGCGUCGUGgUGGUACUcggcAGGGCCg-- -3'
miRNA:   3'- -CGCAGUGCaACCGUGAc---UCCCGGaac -5'
19791 5' -55.4 NC_004687.1 + 66799 0.67 0.893072
Target:  5'- uCGcCGCGUc-GCGCuUGAGGGUCUUGu -3'
miRNA:   3'- cGCaGUGCAacCGUG-ACUCCCGGAAC- -5'
19791 5' -55.4 NC_004687.1 + 15188 0.67 0.893072
Target:  5'- uUGUCACGgaagcUGGCAUgcacgucGAGGGUgUUGa -3'
miRNA:   3'- cGCAGUGCa----ACCGUGa------CUCCCGgAAC- -5'
19791 5' -55.4 NC_004687.1 + 87302 0.67 0.886279
Target:  5'- cGCGUCACGgauaucGCGCuuggacuccuUGAuGGCCUUGg -3'
miRNA:   3'- -CGCAGUGCaac---CGUG----------ACUcCCGGAAC- -5'
19791 5' -55.4 NC_004687.1 + 10762 0.68 0.864559
Target:  5'- gGCGUCGCuGUcgUGGUACUGGauGGCCa-- -3'
miRNA:   3'- -CGCAGUG-CA--ACCGUGACUc-CCGGaac -5'
19791 5' -55.4 NC_004687.1 + 16539 0.68 0.856889
Target:  5'- -gGUgGCGUUGaGCGCcGAGgugucGGCCUUGg -3'
miRNA:   3'- cgCAgUGCAAC-CGUGaCUC-----CCGGAAC- -5'
19791 5' -55.4 NC_004687.1 + 68414 0.68 0.849015
Target:  5'- uCGUCAUGUggUGGguC-GAGGGCCg-- -3'
miRNA:   3'- cGCAGUGCA--ACCguGaCUCCCGGaac -5'
19791 5' -55.4 NC_004687.1 + 132748 0.68 0.840942
Target:  5'- cGCGUC-CGUcGGCGCUGucGGUgaUGg -3'
miRNA:   3'- -CGCAGuGCAaCCGUGACucCCGgaAC- -5'
19791 5' -55.4 NC_004687.1 + 104411 0.68 0.833512
Target:  5'- aGCGUCACGaggcgcgaguccuccUGGCGCaUGAuGGCCUg- -3'
miRNA:   3'- -CGCAGUGCa--------------ACCGUG-ACUcCCGGAac -5'
19791 5' -55.4 NC_004687.1 + 84871 0.68 0.832677
Target:  5'- aCGUCGgGcUGGCGCUcaaucugccGGGCCUUGa -3'
miRNA:   3'- cGCAGUgCaACCGUGAcu-------CCCGGAAC- -5'
19791 5' -55.4 NC_004687.1 + 94546 0.68 0.82763
Target:  5'- gGCGUCgACGagcgacuuguccaccUUGGUGUUGAGGGCCUc- -3'
miRNA:   3'- -CGCAG-UGC---------------AACCGUGACUCCCGGAac -5'
19791 5' -55.4 NC_004687.1 + 142167 0.69 0.815605
Target:  5'- uGCGgaucagacgCugGUUGGC-CUGcuccAGGGCCUUc -3'
miRNA:   3'- -CGCa--------GugCAACCGuGAC----UCCCGGAAc -5'
19791 5' -55.4 NC_004687.1 + 4180 0.7 0.770133
Target:  5'- gGCGUCACGUUGGCcCgGcGGcGCCc-- -3'
miRNA:   3'- -CGCAGUGCAACCGuGaCuCC-CGGaac -5'
19791 5' -55.4 NC_004687.1 + 96314 0.72 0.640301
Target:  5'- gGCGcuUCACGUagccggUGGCGCUcaucaucuGGGCCUUGg -3'
miRNA:   3'- -CGC--AGUGCA------ACCGUGAcu------CCCGGAAC- -5'
19791 5' -55.4 NC_004687.1 + 11577 0.72 0.630024
Target:  5'- gGUGcCACGgcGGCACUGuGGGUCa-- -3'
miRNA:   3'- -CGCaGUGCaaCCGUGACuCCCGGaac -5'
19791 5' -55.4 NC_004687.1 + 101608 1.1 0.002973
Target:  5'- aGCGUCACGUUGGCACUGAGGGCCUUGc -3'
miRNA:   3'- -CGCAGUGCAACCGUGACUCCCGGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.