miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19793 3' -56.4 NC_004687.1 + 127532 0.66 0.907964
Target:  5'- aGAACggUGugCCGa-GAUCGGUCUGGu -3'
miRNA:   3'- aCUUGa-ACugGGUgcCUGGCCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 107699 0.66 0.907964
Target:  5'- cGGccACgUGGCCCGCuGGCCGGUCg-- -3'
miRNA:   3'- aCU--UGaACUGGGUGcCUGGCCGGacu -5'
19793 3' -56.4 NC_004687.1 + 72551 0.66 0.907356
Target:  5'- uUGGGCacggcGACCUggguggcguacuuGCGGAUCGGCCcGAa -3'
miRNA:   3'- -ACUUGaa---CUGGG-------------UGCCUGGCCGGaCU- -5'
19793 3' -56.4 NC_004687.1 + 78038 0.66 0.901775
Target:  5'- gUGAccugGCcgUGGCCCAgGGACUgGGCgUGGc -3'
miRNA:   3'- -ACU----UGa-ACUGGGUgCCUGG-CCGgACU- -5'
19793 3' -56.4 NC_004687.1 + 111763 0.66 0.901775
Target:  5'- cUGGcACcUGACCgGCGGACCgagauccgGGuCCUGGa -3'
miRNA:   3'- -ACU-UGaACUGGgUGCCUGG--------CC-GGACU- -5'
19793 3' -56.4 NC_004687.1 + 30545 0.66 0.901775
Target:  5'- gGAACUUGGCCaCGCuGcACgGGCCg-- -3'
miRNA:   3'- aCUUGAACUGG-GUGcC-UGgCCGGacu -5'
19793 3' -56.4 NC_004687.1 + 87790 0.66 0.901143
Target:  5'- cGGACUUcGACCCGaccgacggcccgcCGGAcaaCCGGuCCUGu -3'
miRNA:   3'- aCUUGAA-CUGGGU-------------GCCU---GGCC-GGACu -5'
19793 3' -56.4 NC_004687.1 + 40851 0.66 0.901143
Target:  5'- cUGGugGCcgGugCCgggguggGCGGuCCGGCCUGAg -3'
miRNA:   3'- -ACU--UGaaCugGG-------UGCCuGGCCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 19586 0.66 0.897951
Target:  5'- cGAGCUUGAUCaguCGGugGCCgaggacaucgcggcgGGCCUGGa -3'
miRNA:   3'- aCUUGAACUGGgu-GCC--UGG---------------CCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 31473 0.66 0.895356
Target:  5'- cGGGCagGACgUCGCGGACCGcGCgCUGc -3'
miRNA:   3'- aCUUGaaCUG-GGUGCCUGGC-CG-GACu -5'
19793 3' -56.4 NC_004687.1 + 45265 0.66 0.894701
Target:  5'- aUGAACacGACCUgauucauCGGGuccucgaagaccuCCGGCCUGAc -3'
miRNA:   3'- -ACUUGaaCUGGGu------GCCU-------------GGCCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 68999 0.66 0.894701
Target:  5'- gUGAGCcUGACCaucguggCGCuGACCaGCCUGGa -3'
miRNA:   3'- -ACUUGaACUGG-------GUGcCUGGcCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 113101 0.66 0.893385
Target:  5'- aUGGGCaacaaccGACCCACGacgcggacauugccGACCGGCgaGAa -3'
miRNA:   3'- -ACUUGaa-----CUGGGUGC--------------CUGGCCGgaCU- -5'
19793 3' -56.4 NC_004687.1 + 60788 0.66 0.888709
Target:  5'- gUGGGCaUGACCCGCGcGGCCaa-CUGGg -3'
miRNA:   3'- -ACUUGaACUGGGUGC-CUGGccgGACU- -5'
19793 3' -56.4 NC_004687.1 + 132142 0.66 0.888709
Target:  5'- cUGGGCUcGGCgcgaCCGCaGGACCuugacGGCCUGGg -3'
miRNA:   3'- -ACUUGAaCUG----GGUG-CCUGG-----CCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 66997 0.66 0.888709
Target:  5'- -cGACUUGacgugggugaccGCCCcCGGGuuGGCCUGc -3'
miRNA:   3'- acUUGAAC------------UGGGuGCCUggCCGGACu -5'
19793 3' -56.4 NC_004687.1 + 74730 0.66 0.888709
Target:  5'- cUGcAGCUUGACCCcgAUGGuguuCUGGCCg-- -3'
miRNA:   3'- -AC-UUGAACUGGG--UGCCu---GGCCGGacu -5'
19793 3' -56.4 NC_004687.1 + 61510 0.66 0.887352
Target:  5'- gUGGAC--GACCauCACGGccuccgacaucuCCGGCCUGAg -3'
miRNA:   3'- -ACUUGaaCUGG--GUGCCu-----------GGCCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 147301 0.66 0.881838
Target:  5'- gUGAGggUcGACCC--GGugCGGCCUGGa -3'
miRNA:   3'- -ACUUgaA-CUGGGugCCugGCCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 7851 0.67 0.877611
Target:  5'- aGAGCUUGcCCCgguccugcgggaacaGCGGAUCGcGCCa-- -3'
miRNA:   3'- aCUUGAACuGGG---------------UGCCUGGC-CGGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.