miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19793 3' -56.4 NC_004687.1 + 99788 1.01 0.010203
Target:  5'- uUGAACUUGACCC-CGGACCGGCCUGAg -3'
miRNA:   3'- -ACUUGAACUGGGuGCCUGGCCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 26377 0.76 0.372773
Target:  5'- aGAACUguccGGCCCGCGccguGAcCCGGCCUGGc -3'
miRNA:   3'- aCUUGAa---CUGGGUGC----CU-GGCCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 130113 0.75 0.453904
Target:  5'- aGAugUUggcgcucucgucuucGACCCagGCGGGCgCGGCCUGAg -3'
miRNA:   3'- aCUugAA---------------CUGGG--UGCCUG-GCCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 142985 0.73 0.535799
Target:  5'- uUGGACcugGGCCUGUGGAUCGGCCUGu -3'
miRNA:   3'- -ACUUGaa-CUGGGUGCCUGGCCGGACu -5'
19793 3' -56.4 NC_004687.1 + 137227 0.72 0.595859
Target:  5'- aGGACUUguagGACCggCGCGGGgUGGCCUGGa -3'
miRNA:   3'- aCUUGAA----CUGG--GUGCCUgGCCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 37456 0.71 0.616159
Target:  5'- -cGACUUGGCCC-CGGAUgaGGCUUGGu -3'
miRNA:   3'- acUUGAACUGGGuGCCUGg-CCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 110365 0.71 0.62633
Target:  5'- cGAGCgggUGACCCACGGGC--GCCcGAc -3'
miRNA:   3'- aCUUGa--ACUGGGUGCCUGgcCGGaCU- -5'
19793 3' -56.4 NC_004687.1 + 85409 0.71 0.636506
Target:  5'- cGAuGCgggUGGCCgACGGcACCGGCgUGAc -3'
miRNA:   3'- aCU-UGa--ACUGGgUGCC-UGGCCGgACU- -5'
19793 3' -56.4 NC_004687.1 + 118974 0.71 0.646679
Target:  5'- uUGAGCUUGGCCgaGCGGccACCGGCg--- -3'
miRNA:   3'- -ACUUGAACUGGg-UGCC--UGGCCGgacu -5'
19793 3' -56.4 NC_004687.1 + 48941 0.71 0.646679
Target:  5'- cGcGCUcGGCCuCGCGGGCCcGGCgCUGAa -3'
miRNA:   3'- aCuUGAaCUGG-GUGCCUGG-CCG-GACU- -5'
19793 3' -56.4 NC_004687.1 + 50712 0.71 0.65684
Target:  5'- cUGGGCgUGACCgaggucuccagCGCGGgcACCGGCCUGu -3'
miRNA:   3'- -ACUUGaACUGG-----------GUGCC--UGGCCGGACu -5'
19793 3' -56.4 NC_004687.1 + 102779 0.7 0.687173
Target:  5'- aGGAuCUUGGCCguCGCGGcCCGGCCa-- -3'
miRNA:   3'- aCUU-GAACUGG--GUGCCuGGCCGGacu -5'
19793 3' -56.4 NC_004687.1 + 102273 0.69 0.736705
Target:  5'- cGAGCUUG-UCCA-GGGCCuugcgGGCCUGGu -3'
miRNA:   3'- aCUUGAACuGGGUgCCUGG-----CCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 17262 0.69 0.736705
Target:  5'- cUGGGCUcgGACCgACGaucagcugcGugCGGCCUGGa -3'
miRNA:   3'- -ACUUGAa-CUGGgUGC---------CugGCCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 76454 0.69 0.746378
Target:  5'- cGGGCUgGACCU-CGGACUGGgaCCUGGg -3'
miRNA:   3'- aCUUGAaCUGGGuGCCUGGCC--GGACU- -5'
19793 3' -56.4 NC_004687.1 + 19072 0.69 0.764476
Target:  5'- -cGGCUUccuGCCCACGGACUGGgugcgucCCUGAu -3'
miRNA:   3'- acUUGAAc--UGGGUGCCUGGCC-------GGACU- -5'
19793 3' -56.4 NC_004687.1 + 80375 0.69 0.765417
Target:  5'- cGGAC-UGAUCCACGGugauCCGGaCCUc- -3'
miRNA:   3'- aCUUGaACUGGGUGCCu---GGCC-GGAcu -5'
19793 3' -56.4 NC_004687.1 + 71836 0.68 0.783073
Target:  5'- aGAGgUaGACCCGCaGGuacuguaGCUGGCCUGGu -3'
miRNA:   3'- aCUUgAaCUGGGUG-CC-------UGGCCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 43387 0.68 0.783989
Target:  5'- cGGACagGACCaGgGGACCGGCaCUGc -3'
miRNA:   3'- aCUUGaaCUGGgUgCCUGGCCG-GACu -5'
19793 3' -56.4 NC_004687.1 + 12347 0.68 0.783989
Target:  5'- gUGGAgUUGcCCgCGCGGAucuccaccaCCGGCCUGc -3'
miRNA:   3'- -ACUUgAACuGG-GUGCCU---------GGCCGGACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.