miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19793 3' -56.4 NC_004687.1 + 117431 0.67 0.874749
Target:  5'- cGGugU-GACCCGgGuGcCCGGCCUGc -3'
miRNA:   3'- aCUugAaCUGGGUgC-CuGGCCGGACu -5'
19793 3' -56.4 NC_004687.1 + 71935 0.67 0.874749
Target:  5'- cGAcaGCUacGCCCACGaGGCCGaGCCgGAc -3'
miRNA:   3'- aCU--UGAacUGGGUGC-CUGGC-CGGaCU- -5'
19793 3' -56.4 NC_004687.1 + 39457 0.67 0.874749
Target:  5'- aGGGCUUGGgCUugGGgucGCCggugauGGCCUGGu -3'
miRNA:   3'- aCUUGAACUgGGugCC---UGG------CCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 110630 0.67 0.874749
Target:  5'- -cGACgaGACCCuCGGAguCCGGCgUGGu -3'
miRNA:   3'- acUUGaaCUGGGuGCCU--GGCCGgACU- -5'
19793 3' -56.4 NC_004687.1 + 129233 0.67 0.874749
Target:  5'- gUGAGCUUGuaguaGCCUACaGACgaGGCCUaGAa -3'
miRNA:   3'- -ACUUGAAC-----UGGGUGcCUGg-CCGGA-CU- -5'
19793 3' -56.4 NC_004687.1 + 98329 0.67 0.867445
Target:  5'- cGAGCUguucUGACCCuuGGucucGCUGGCCa-- -3'
miRNA:   3'- aCUUGA----ACUGGGugCC----UGGCCGGacu -5'
19793 3' -56.4 NC_004687.1 + 49451 0.67 0.867445
Target:  5'- aGGA--UGGCCCGCaGGAUCGGCaUGGu -3'
miRNA:   3'- aCUUgaACUGGGUG-CCUGGCCGgACU- -5'
19793 3' -56.4 NC_004687.1 + 316 0.67 0.867445
Target:  5'- -uGugUUGGCCCuCGucAUCGGCCUGAu -3'
miRNA:   3'- acUugAACUGGGuGCc-UGGCCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 25317 0.67 0.866703
Target:  5'- cGGuACUUGACCaucugguaagcagCACGGucgACCGGCUUGu -3'
miRNA:   3'- aCU-UGAACUGG-------------GUGCC---UGGCCGGACu -5'
19793 3' -56.4 NC_004687.1 + 94098 0.67 0.859931
Target:  5'- aGGGC-UGGCCCugGG-UCGGCgUGc -3'
miRNA:   3'- aCUUGaACUGGGugCCuGGCCGgACu -5'
19793 3' -56.4 NC_004687.1 + 56985 0.67 0.859931
Target:  5'- cGAACUUGuucgGCCCGCGaGGgucgaguuuuCCaGCCUGAc -3'
miRNA:   3'- aCUUGAAC----UGGGUGC-CU----------GGcCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 43175 0.67 0.852215
Target:  5'- gGAGCgggUGGggCGgGGGCCGGUCUGGg -3'
miRNA:   3'- aCUUGa--ACUggGUgCCUGGCCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 80979 0.67 0.852215
Target:  5'- aUGGcCaUGAgCUGCGGGCUGGCCaUGAu -3'
miRNA:   3'- -ACUuGaACUgGGUGCCUGGCCGG-ACU- -5'
19793 3' -56.4 NC_004687.1 + 9264 0.67 0.844301
Target:  5'- aGAACa-GACCCGCGucCauaaaGGCCUGGa -3'
miRNA:   3'- aCUUGaaCUGGGUGCcuGg----CCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 87807 0.67 0.836197
Target:  5'- cGuGCUUGuAgCCGgGGACuCGGCCUGc -3'
miRNA:   3'- aCuUGAAC-UgGGUgCCUG-GCCGGACu -5'
19793 3' -56.4 NC_004687.1 + 40521 0.67 0.836197
Target:  5'- ---cCUUGGCCCGCGcGGCCaucuccucgGGCCUcGAu -3'
miRNA:   3'- acuuGAACUGGGUGC-CUGG---------CCGGA-CU- -5'
19793 3' -56.4 NC_004687.1 + 19169 0.68 0.819445
Target:  5'- cGAACUcGGCCCGCa---CGGCCUGc -3'
miRNA:   3'- aCUUGAaCUGGGUGccugGCCGGACu -5'
19793 3' -56.4 NC_004687.1 + 63778 0.68 0.819445
Target:  5'- uUGAGCUUGGCgCCcUGGACCuuggucgcGGCCccgGAg -3'
miRNA:   3'- -ACUUGAACUG-GGuGCCUGG--------CCGGa--CU- -5'
19793 3' -56.4 NC_004687.1 + 100745 0.68 0.81859
Target:  5'- aUGAGCUUGGCguagucgaagcgCUugccgagcgcgucGCGGAuaCCGGCCUGGc -3'
miRNA:   3'- -ACUUGAACUG------------GG-------------UGCCU--GGCCGGACU- -5'
19793 3' -56.4 NC_004687.1 + 132594 0.68 0.793077
Target:  5'- -cAGCUUGGCCCGCaGGGCCucCCUGc -3'
miRNA:   3'- acUUGAACUGGGUG-CCUGGccGGACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.