Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
198 | 3' | -51.9 | AC_000007.1 | + | 12416 | 0.72 | 0.46426 |
Target: 5'- aACCcugACGCGuucCGGCaGcAGCCGCAGGCCa -3' miRNA: 3'- -UGGa--UGCGU---GCUG-CaUUGGUGUCUGG- -5' |
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198 | 3' | -51.9 | AC_000007.1 | + | 3400 | 0.72 | 0.453849 |
Target: 5'- aGCCUgugAUGCugGAUGUGACCGaggagcugAGGCCc -3' miRNA: 3'- -UGGA---UGCGugCUGCAUUGGUg-------UCUGG- -5' |
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198 | 3' | -51.9 | AC_000007.1 | + | 10862 | 0.72 | 0.443565 |
Target: 5'- cGCUUACGC-CGcGCGcGGCCAguGGCCa -3' miRNA: 3'- -UGGAUGCGuGC-UGCaUUGGUguCUGG- -5' |
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198 | 3' | -51.9 | AC_000007.1 | + | 17601 | 0.72 | 0.433414 |
Target: 5'- cCCUGCGCACGGaaauCGggGCCagcACGGGCUg -3' miRNA: 3'- uGGAUGCGUGCU----GCauUGG---UGUCUGG- -5' |
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198 | 3' | -51.9 | AC_000007.1 | + | 10808 | 0.74 | 0.348549 |
Target: 5'- gGCC-GCGCGCGGCGUAAgCGguUAGGCUg -3' miRNA: 3'- -UGGaUGCGUGCUGCAUUgGU--GUCUGG- -5' |
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198 | 3' | -51.9 | AC_000007.1 | + | 14176 | 0.75 | 0.314827 |
Target: 5'- uCCUACGagaGCGugGUGAgCGCGGcGCCa -3' miRNA: 3'- uGGAUGCg--UGCugCAUUgGUGUC-UGG- -5' |
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198 | 3' | -51.9 | AC_000007.1 | + | 9948 | 0.75 | 0.306791 |
Target: 5'- gACCUGCGC-CGAUGUcaaaacgaAGCCugGGGCa -3' miRNA: 3'- -UGGAUGCGuGCUGCA--------UUGGugUCUGg -5' |
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198 | 3' | -51.9 | AC_000007.1 | + | 17812 | 0.76 | 0.261872 |
Target: 5'- cGCCgguggUGCGCACGACGcauGCCGCccgucAGGCCg -3' miRNA: 3'- -UGG-----AUGCGUGCUGCau-UGGUG-----UCUGG- -5' |
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198 | 3' | -51.9 | AC_000007.1 | + | 6502 | 0.78 | 0.210481 |
Target: 5'- cGCCUACGCGgaGAgGUAGCCACcagcguuGACCu -3' miRNA: 3'- -UGGAUGCGUg-CUgCAUUGGUGu------CUGG- -5' |
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198 | 3' | -51.9 | AC_000007.1 | + | 18970 | 1.13 | 0.000765 |
Target: 5'- cACCUACGCACGACGUAACCACAGACCg -3' miRNA: 3'- -UGGAUGCGUGCUGCAUUGGUGUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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