miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19812 3' -57.1 NC_004687.1 + 57956 0.66 0.917417
Target:  5'- gCCGCGcggaacuucgCGUCGAagcucAUCGGCUUGUCCg -3'
miRNA:   3'- -GGCGCua--------GCGGCUc----UGGCUGAACGGG- -5'
19812 3' -57.1 NC_004687.1 + 69410 0.66 0.917417
Target:  5'- uCCGgGuugagCGCCGGGGCCGc---GUCCg -3'
miRNA:   3'- -GGCgCua---GCGGCUCUGGCugaaCGGG- -5'
19812 3' -57.1 NC_004687.1 + 113810 0.66 0.917417
Target:  5'- aUCGCGAccccuggCGCgCG-GACgGGCUcaagGCCCa -3'
miRNA:   3'- -GGCGCUa------GCG-GCuCUGgCUGAa---CGGG- -5'
19812 3' -57.1 NC_004687.1 + 70991 0.66 0.917417
Target:  5'- uCCGCG-UCgGCCuugaGGACCGcguCUggGCCCg -3'
miRNA:   3'- -GGCGCuAG-CGGc---UCUGGCu--GAa-CGGG- -5'
19812 3' -57.1 NC_004687.1 + 135529 0.66 0.917417
Target:  5'- cCCgGCGGUcugggCGCCGAuGGCCuaccGCUgGCCCu -3'
miRNA:   3'- -GG-CGCUA-----GCGGCU-CUGGc---UGAaCGGG- -5'
19812 3' -57.1 NC_004687.1 + 105091 0.66 0.917417
Target:  5'- aCGCGG--GCCG-GGCCGGuCUcGCCUg -3'
miRNA:   3'- gGCGCUagCGGCuCUGGCU-GAaCGGG- -5'
19812 3' -57.1 NC_004687.1 + 25608 0.66 0.917417
Target:  5'- gCCGgGAauggCGCCGAGGCCaugaGCUgGUUCa -3'
miRNA:   3'- -GGCgCUa---GCGGCUCUGGc---UGAaCGGG- -5'
19812 3' -57.1 NC_004687.1 + 68314 0.66 0.917417
Target:  5'- aUCGgGuugaGUCGCCGGacgccGACgGugUUGUCCg -3'
miRNA:   3'- -GGCgC----UAGCGGCU-----CUGgCugAACGGG- -5'
19812 3' -57.1 NC_004687.1 + 27192 0.66 0.917417
Target:  5'- aCGcCGAcC-CCGAGACCGAC--GCCg -3'
miRNA:   3'- gGC-GCUaGcGGCUCUGGCUGaaCGGg -5'
19812 3' -57.1 NC_004687.1 + 66406 0.66 0.917417
Target:  5'- aCGUGAUCGgcuacCCGGuGACCG-CUUauggcgucaGCCCg -3'
miRNA:   3'- gGCGCUAGC-----GGCU-CUGGCuGAA---------CGGG- -5'
19812 3' -57.1 NC_004687.1 + 48285 0.66 0.917417
Target:  5'- cUCGCgGAUCGCgGugaGGACCcACgggugguugUGCCCg -3'
miRNA:   3'- -GGCG-CUAGCGgC---UCUGGcUGa--------ACGGG- -5'
19812 3' -57.1 NC_004687.1 + 144853 0.66 0.917417
Target:  5'- gCGUGGUCGUggucuucuuCGAGGCCugGGCUcugGCCUu -3'
miRNA:   3'- gGCGCUAGCG---------GCUCUGG--CUGAa--CGGG- -5'
19812 3' -57.1 NC_004687.1 + 111445 0.66 0.917417
Target:  5'- -gGuCGA-CGCCGAGAagagcuacaCCGGCgacucgGCCCu -3'
miRNA:   3'- ggC-GCUaGCGGCUCU---------GGCUGaa----CGGG- -5'
19812 3' -57.1 NC_004687.1 + 50913 0.66 0.917417
Target:  5'- aCGUcAUCGCCGAgcuGAUCGACau-CCCg -3'
miRNA:   3'- gGCGcUAGCGGCU---CUGGCUGaacGGG- -5'
19812 3' -57.1 NC_004687.1 + 43697 0.66 0.917417
Target:  5'- uUGCGGUCGaCGuuGACCGAC--GCCg -3'
miRNA:   3'- gGCGCUAGCgGCu-CUGGCUGaaCGGg -5'
19812 3' -57.1 NC_004687.1 + 119192 0.66 0.917417
Target:  5'- aCCgGCGGUCuugcCCGGGGCCuGCggGCCa -3'
miRNA:   3'- -GG-CGCUAGc---GGCUCUGGcUGaaCGGg -5'
19812 3' -57.1 NC_004687.1 + 87071 0.66 0.911741
Target:  5'- cCUGCGGaUGCCGugcguGGCCGAg--GCCUg -3'
miRNA:   3'- -GGCGCUaGCGGCu----CUGGCUgaaCGGG- -5'
19812 3' -57.1 NC_004687.1 + 63521 0.66 0.911741
Target:  5'- aCCGCGcgCGg-GAGACCGGCgucgacgaGCCg -3'
miRNA:   3'- -GGCGCuaGCggCUCUGGCUGaa------CGGg -5'
19812 3' -57.1 NC_004687.1 + 114388 0.66 0.911741
Target:  5'- cCUGCa--CGCCGAGGaccCCGACUggaaggGCCa -3'
miRNA:   3'- -GGCGcuaGCGGCUCU---GGCUGAa-----CGGg -5'
19812 3' -57.1 NC_004687.1 + 38938 0.66 0.911741
Target:  5'- aCCGCGAgaUCGUCGAGuaCGACgaggagaccgGCCa -3'
miRNA:   3'- -GGCGCU--AGCGGCUCugGCUGaa--------CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.