miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19812 5' -53.5 NC_004687.1 + 127525 0.66 0.97159
Target:  5'- -aGGCCAgaGAACgGUgUGCCGAGAu- -3'
miRNA:   3'- cgCCGGUa-CUUGaCAgGUGGCUCUug -5'
19812 5' -53.5 NC_004687.1 + 5170 0.66 0.97159
Target:  5'- aGCGcGCCGagcGAuccgcgcgcaagGCUG-CCGCCGAGGAg -3'
miRNA:   3'- -CGC-CGGUa--CU------------UGACaGGUGGCUCUUg -5'
19812 5' -53.5 NC_004687.1 + 91617 0.66 0.97159
Target:  5'- aGCuGGCCGaa---UGUCCGCUGGGggUg -3'
miRNA:   3'- -CG-CCGGUacuugACAGGUGGCUCuuG- -5'
19812 5' -53.5 NC_004687.1 + 82015 0.66 0.97159
Target:  5'- cGCGGCCAUcauguuggcguaGAGCcggggGUCCugCu-GAGCg -3'
miRNA:   3'- -CGCCGGUA------------CUUGa----CAGGugGcuCUUG- -5'
19812 5' -53.5 NC_004687.1 + 74748 0.66 0.97159
Target:  5'- --aGCCAUGAagcgGCUcUCCGCCGAcGGCg -3'
miRNA:   3'- cgcCGGUACU----UGAcAGGUGGCUcUUG- -5'
19812 5' -53.5 NC_004687.1 + 90738 0.66 0.97159
Target:  5'- gGUGGCC--GGGCUGUaaACCaGGGGACu -3'
miRNA:   3'- -CGCCGGuaCUUGACAggUGG-CUCUUG- -5'
19812 5' -53.5 NC_004687.1 + 94488 0.66 0.97159
Target:  5'- -gGGCgAaaAACUG-CCGCCGAGAAg -3'
miRNA:   3'- cgCCGgUacUUGACaGGUGGCUCUUg -5'
19812 5' -53.5 NC_004687.1 + 17428 0.66 0.97159
Target:  5'- aUGGCCuccGGCUGUCCGCgCGGcugugcGAGCg -3'
miRNA:   3'- cGCCGGuacUUGACAGGUG-GCU------CUUG- -5'
19812 5' -53.5 NC_004687.1 + 34887 0.66 0.97159
Target:  5'- cCGGCCAUcugGAACUGggucugcaCCACCGcguGGAucGCg -3'
miRNA:   3'- cGCCGGUA---CUUGACa-------GGUGGC---UCU--UG- -5'
19812 5' -53.5 NC_004687.1 + 53698 0.66 0.97159
Target:  5'- cUGGCCgAUGAGCg--CCACCGuGGucgGCg -3'
miRNA:   3'- cGCCGG-UACUUGacaGGUGGCuCU---UG- -5'
19812 5' -53.5 NC_004687.1 + 136739 0.66 0.97159
Target:  5'- -aGGCCGUGcuGCUGggCGCUGGcGAACg -3'
miRNA:   3'- cgCCGGUACu-UGACagGUGGCU-CUUG- -5'
19812 5' -53.5 NC_004687.1 + 23198 0.66 0.971303
Target:  5'- cGUGGCCGUccGAguggaucaucagcAC-GUCUACCGGGAGa -3'
miRNA:   3'- -CGCCGGUA--CU-------------UGaCAGGUGGCUCUUg -5'
19812 5' -53.5 NC_004687.1 + 95398 0.66 0.970724
Target:  5'- cGCGGCCAccgaggucacccgcUG-ACUGUUCAUCGAcaccGGCg -3'
miRNA:   3'- -CGCCGGU--------------ACuUGACAGGUGGCUc---UUG- -5'
19812 5' -53.5 NC_004687.1 + 121237 0.66 0.968629
Target:  5'- -aGGCCAuUGGg--GUCUGCCGGGAAg -3'
miRNA:   3'- cgCCGGU-ACUugaCAGGUGGCUCUUg -5'
19812 5' -53.5 NC_004687.1 + 13630 0.66 0.968629
Target:  5'- cGCuGGCCGacGAACUGgcgCUgaACCGAuGAGCg -3'
miRNA:   3'- -CG-CCGGUa-CUUGACa--GG--UGGCU-CUUG- -5'
19812 5' -53.5 NC_004687.1 + 20697 0.66 0.968629
Target:  5'- -gGGCC--GAGCggGagCACCGGGAACg -3'
miRNA:   3'- cgCCGGuaCUUGa-CagGUGGCUCUUG- -5'
19812 5' -53.5 NC_004687.1 + 121036 0.66 0.968629
Target:  5'- uCGGCgAUGAGCUGcUCCAgggugcCCGGaGGCa -3'
miRNA:   3'- cGCCGgUACUUGAC-AGGU------GGCUcUUG- -5'
19812 5' -53.5 NC_004687.1 + 12142 0.66 0.968629
Target:  5'- gGUGGCgAUcgaGGACUGcCCGCCGccgucgucguAGAGCc -3'
miRNA:   3'- -CGCCGgUA---CUUGACaGGUGGC----------UCUUG- -5'
19812 5' -53.5 NC_004687.1 + 74611 0.66 0.968321
Target:  5'- aCGGUCAUGGacuacauGCUGUCCAacuUCaAGGACa -3'
miRNA:   3'- cGCCGGUACU-------UGACAGGU---GGcUCUUG- -5'
19812 5' -53.5 NC_004687.1 + 40250 0.66 0.96675
Target:  5'- uGCGGCUucuuguaGAACUGcucgggcucguaggCCAgCGAGGACa -3'
miRNA:   3'- -CGCCGGua-----CUUGACa-------------GGUgGCUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.